Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
B [auth D]SCOP2B SuperfamilyPapD-like8055309 3002067 SCOP2B (2022-06-29)
C [auth K]SCOP2B SuperfamilyBacterial adhesin-like8040209 3000723 SCOP2B (2022-06-29)
D [auth G]SCOP2B SuperfamilyBacterial adhesin-like8034239 3000723 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth C]PF13954e7lhgC3 A: beta barrelsX: FimD N-terminal domain-likeH: FimD N-terminal domain-like (From Topology)T: FimD N-terminal domain-likeF: PF13954ECOD (1.6)
A [auth C]PF00577e7lhgC1 A: beta barrelsX: Outer membrane meander beta-barrelsH: Usher PapC translocation pore (From Topology)T: Usher PapC translocation poreF: PF00577ECOD (1.6)
A [auth C]PF00577e7lhgC2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF00577ECOD (1.6)
A [auth C]PF00577e7lhgC4 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Prealbumin-likeF: PF00577ECOD (1.6)
A [auth C]PF13953e7lhgC5 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Prealbumin-likeF: PF13953ECOD (1.6)
B [auth D]PF00345e7lhgD1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF00345ECOD (1.6)
B [auth D]PF02753e7lhgD2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF02753ECOD (1.6)
C [auth K]PF00419e7lhgK1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Common fold of diphtheria toxin/transcription factors/cytochrome fF: PF00419ECOD (1.6)
D [auth G]PF03627e7lhgG1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Common fold of diphtheria toxin/transcription factors/cytochrome fF: PF03627ECOD (1.6)
D [auth G]PF03628e7lhgG2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Common fold of diphtheria toxin/transcription factors/cytochrome fF: PF03628ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth C]PF13954PapC N-terminal domain (PapC_N)PapC N-terminal domainThe PapC N-terminal domain is a structural domain found at the N-terminus of the E. coli PapC protein. Pili are assembled using the chaperone usher system. In E.coli this is composed of the chaperone PapD and the usher PapC. This domain represents th ...The PapC N-terminal domain is a structural domain found at the N-terminus of the E. coli PapC protein. Pili are assembled using the chaperone usher system. In E.coli this is composed of the chaperone PapD and the usher PapC. This domain represents the N-terminal domain from PapC and its homologues. This domain is involved in substrate binding [1].
Domain
A [auth C]PF00577Outer membrane usher protein (Usher)Outer membrane usher protein- Family
A [auth C]PF13953PapC C-terminal domain (PapC_C)PapC C-terminal domainThe PapC C-terminal domain is a structural domain found at the C-terminus of the E. coli PapC protein. Pili are assembled using the chaperone usher system. In E.coli this is composed of the chaperone PapD and the usher PapC. This domain represents th ...The PapC C-terminal domain is a structural domain found at the C-terminus of the E. coli PapC protein. Pili are assembled using the chaperone usher system. In E.coli this is composed of the chaperone PapD and the usher PapC. This domain represents the C-terminal domain from PapC and its homologues. This domain has a beta-sandwich structure similar to the plug domain of PapC [1].
Domain
B [auth D]PF02753Pili assembly chaperone PapD, C-terminal domain (PapD_C)Pili assembly chaperone PapD, C-terminal domainIg-like beta-sandwich fold. This domain is the C-terminal part of the pilus and flagellar-assembly chaperone protein PapD.Domain
B [auth D]PF00345Pili and flagellar-assembly chaperone, PapD N-terminal domain (PapD_N)Pili and flagellar-assembly chaperone, PapD N-terminal domainC2 domain-like beta-sandwich fold. This domain is the n-terminal part of the PapD chaperone protein for pilus and flagellar assembly.Domain
C [auth K]PF00419Fimbrial protein (Fimbrial)Fimbrial protein- Domain
D [auth G]PF03627PapG carbohydrate binding domain (PapG_N)PapG carbohydrate binding domainPapG, the adhesin of the P-pili, is situated at the tip and is only a minor component of the whole pilus structure. A two-domain structure has been postulated for PapG; a carbohydrate binding N-terminus (this domain) and chaperone binding C-terminus ...PapG, the adhesin of the P-pili, is situated at the tip and is only a minor component of the whole pilus structure. A two-domain structure has been postulated for PapG; a carbohydrate binding N-terminus (this domain) and chaperone binding C-terminus. The carbohydrate-binding domain interacts with the receptor glycan [1,2].
Domain
D [auth G]PF03628PapG chaperone-binding domain (PapG_C)PapG chaperone-binding domainPapG, the adhesin of the P-pili, is situated at the tip and is only a minor component of the whole pilus structure. A two-domain structure has been postulated for PapG; a carbohydrate binding N-terminus and chaperone binding C-terminus (this domai ...PapG, the adhesin of the P-pili, is situated at the tip and is only a minor component of the whole pilus structure. A two-domain structure has been postulated for PapG; a carbohydrate binding N-terminus and chaperone binding C-terminus (this domain). The chaperone-binding domain is highly conserved, and is essential for the correct assembly of the pili structure when aided by the chaperone molecule PapD [1,2].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth C]P fimbrial usher protein PapC
B [auth D]Chaperone protein PapD-
C [auth K]Fimbrial adapter PapK-
D [auth G]P fimbria tip G-adhesin PapG-II

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth C]IPR042186Outer membrane usher protein FimD, plug domainHomologous Superfamily
A [auth C]IPR037224PapC, N-terminal domain superfamilyHomologous Superfamily
A [auth C]IPR018030Fimbrial membrane usher, conserved siteConserved Site
A [auth C]IPR025885PapC, N-terminal domainDomain
A [auth C]IPR043142PapC-like, C-terminal domain superfamilyHomologous Superfamily
A [auth C]IPR025949PapC-like, C-terminal domainDomain
A [auth C]IPR000015Outer membrane usher proteinFamily
B [auth D]IPR036316Pili assembly chaperone, C-terminal domain superfamilyHomologous Superfamily
B [auth D]IPR013783Immunoglobulin-like foldHomologous Superfamily
B [auth D]IPR016148Pili assembly chaperone, C-terminalDomain
B [auth D]IPR008962PapD-like superfamilyHomologous Superfamily
B [auth D]IPR016147Pili assembly chaperone, N-terminalDomain
B [auth D]IPR001829Pili assembly chaperone, bacterialFamily
B [auth D]IPR018046Pili assembly chaperone, conserved siteConserved Site
C [auth K]IPR000259Fimbrial-type adhesion domainDomain
C [auth K]IPR036937Fimbrial-type adhesion domain superfamilyHomologous Superfamily
C [auth K]IPR008966Adhesion domain superfamilyHomologous Superfamily
D [auth G]IPR038420PapG, carbohydrate-binding domain superfamilyHomologous Superfamily
D [auth G]IPR036937Fimbrial-type adhesion domain superfamilyHomologous Superfamily
D [auth G]IPR005309PapG, chaperone-bindingDomain
D [auth G]IPR005310PapG, carbohydrate-binding domainDomain
D [auth G]IPR008966Adhesion domain superfamilyHomologous Superfamily