Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyRNA bacteriophage capsid protein8035305 3001853 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyRNA bacteriophage capsid protein8035305 3001853 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyRNA bacteriophage capsid protein8035305 3001853 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyRNA bacteriophage capsid protein8035305 3001853 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyRNA bacteriophage capsid protein8035305 3001853 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRNA bacteriophage capsid protein8035305 3001853 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyRNA bacteriophage capsid protein8035305 3001853 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyRNA bacteriophage capsid protein8035305 3001853 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyRNA bacteriophage capsid protein8035305 3001853 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyRNA bacteriophage capsid protein8035305 3001853 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyRNA bacteriophage capsid protein8035305 3001853 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyRNA bacteriophage capsid protein8035305 3001853 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyRNA bacteriophage capsid protein8035305 3001853 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyRNA bacteriophage capsid protein8035305 3001853 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyRNA bacteriophage capsid protein8035305 3001853 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyRNA bacteriophage capsid protein8035305 3001853 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyRNA bacteriophage capsid protein8035305 3001853 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyRNA bacteriophage capsid protein8035305 3001853 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyRNA bacteriophage capsid protein8035305 3001853 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyRNA bacteriophage capsid protein8035305 3001853 SCOP2B (2022-06-29)
USCOP2B SuperfamilyRNA bacteriophage capsid protein8035305 3001853 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF01819e7lgfA1 A: a+b two layersX: RNA bacteriophage capsid protein (From Topology)H: RNA bacteriophage capsid protein (From Topology)T: RNA bacteriophage capsid proteinF: PF01819ECOD (1.6)
BPF01819e7lgfB1 A: a+b two layersX: RNA bacteriophage capsid protein (From Topology)H: RNA bacteriophage capsid protein (From Topology)T: RNA bacteriophage capsid proteinF: PF01819ECOD (1.6)
CPF01819e7lgfC1 A: a+b two layersX: RNA bacteriophage capsid protein (From Topology)H: RNA bacteriophage capsid protein (From Topology)T: RNA bacteriophage capsid proteinF: PF01819ECOD (1.6)
DPF01819e7lgfD1 A: a+b two layersX: RNA bacteriophage capsid protein (From Topology)H: RNA bacteriophage capsid protein (From Topology)T: RNA bacteriophage capsid proteinF: PF01819ECOD (1.6)
EPF01819e7lgfE1 A: a+b two layersX: RNA bacteriophage capsid protein (From Topology)H: RNA bacteriophage capsid protein (From Topology)T: RNA bacteriophage capsid proteinF: PF01819ECOD (1.6)
FPF01819e7lgfF1 A: a+b two layersX: RNA bacteriophage capsid protein (From Topology)H: RNA bacteriophage capsid protein (From Topology)T: RNA bacteriophage capsid proteinF: PF01819ECOD (1.6)
GPF01819e7lgfG1 A: a+b two layersX: RNA bacteriophage capsid protein (From Topology)H: RNA bacteriophage capsid protein (From Topology)T: RNA bacteriophage capsid proteinF: PF01819ECOD (1.6)
HPF01819e7lgfH1 A: a+b two layersX: RNA bacteriophage capsid protein (From Topology)H: RNA bacteriophage capsid protein (From Topology)T: RNA bacteriophage capsid proteinF: PF01819ECOD (1.6)
IPF01819e7lgfI1 A: a+b two layersX: RNA bacteriophage capsid protein (From Topology)H: RNA bacteriophage capsid protein (From Topology)T: RNA bacteriophage capsid proteinF: PF01819ECOD (1.6)
JPF01819e7lgfJ1 A: a+b two layersX: RNA bacteriophage capsid protein (From Topology)H: RNA bacteriophage capsid protein (From Topology)T: RNA bacteriophage capsid proteinF: PF01819ECOD (1.6)
KPF01819e7lgfK1 A: a+b two layersX: RNA bacteriophage capsid protein (From Topology)H: RNA bacteriophage capsid protein (From Topology)T: RNA bacteriophage capsid proteinF: PF01819ECOD (1.6)
LPF01819e7lgfL1 A: a+b two layersX: RNA bacteriophage capsid protein (From Topology)H: RNA bacteriophage capsid protein (From Topology)T: RNA bacteriophage capsid proteinF: PF01819ECOD (1.6)
MPF01819e7lgfM1 A: a+b two layersX: RNA bacteriophage capsid protein (From Topology)H: RNA bacteriophage capsid protein (From Topology)T: RNA bacteriophage capsid proteinF: PF01819ECOD (1.6)
NPF01819e7lgfN1 A: a+b two layersX: RNA bacteriophage capsid protein (From Topology)H: RNA bacteriophage capsid protein (From Topology)T: RNA bacteriophage capsid proteinF: PF01819ECOD (1.6)
OPF01819e7lgfO1 A: a+b two layersX: RNA bacteriophage capsid protein (From Topology)H: RNA bacteriophage capsid protein (From Topology)T: RNA bacteriophage capsid proteinF: PF01819ECOD (1.6)
PPF01819e7lgfP1 A: a+b two layersX: RNA bacteriophage capsid protein (From Topology)H: RNA bacteriophage capsid protein (From Topology)T: RNA bacteriophage capsid proteinF: PF01819ECOD (1.6)
QPF01819e7lgfQ1 A: a+b two layersX: RNA bacteriophage capsid protein (From Topology)H: RNA bacteriophage capsid protein (From Topology)T: RNA bacteriophage capsid proteinF: PF01819ECOD (1.6)
RPF01819e7lgfR1 A: a+b two layersX: RNA bacteriophage capsid protein (From Topology)H: RNA bacteriophage capsid protein (From Topology)T: RNA bacteriophage capsid proteinF: PF01819ECOD (1.6)
SPF01819e7lgfS1 A: a+b two layersX: RNA bacteriophage capsid protein (From Topology)H: RNA bacteriophage capsid protein (From Topology)T: RNA bacteriophage capsid proteinF: PF01819ECOD (1.6)
TPF01819e7lgfT1 A: a+b two layersX: RNA bacteriophage capsid protein (From Topology)H: RNA bacteriophage capsid protein (From Topology)T: RNA bacteriophage capsid proteinF: PF01819ECOD (1.6)
UPF01819e7lgfU1 A: a+b two layersX: RNA bacteriophage capsid protein (From Topology)H: RNA bacteriophage capsid protein (From Topology)T: RNA bacteriophage capsid proteinF: PF01819ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF01819Levivirus coat protein (Levi_coat)Levivirus coat proteinThe Levivirus coat protein forms the bacteriophage coat that encapsidates the viral RNA. 180 copies of this protein form the virion shell. The MS2 bacteriophage coat protein controls two distinct processes: sequence-specific RNA encapsidation and re ...The Levivirus coat protein forms the bacteriophage coat that encapsidates the viral RNA. 180 copies of this protein form the virion shell. The MS2 bacteriophage coat protein controls two distinct processes: sequence-specific RNA encapsidation and repression of replicase translation-by binding to an RNA stem-loop structure of 19 nucleotides containing the initiation codon of the replicase gene. The binding of a coat protein dimer to this hairpin shuts off synthesis of the viral replicase, switching the viral replication cycle to virion assembly rather than continued replication [2].
Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR002703Levivirus coat proteinFamily
A, B, C, D, E
IPR015954Bacteriophage RNA-type, capsidHomologous Superfamily