7LFH

Cryo-EM structure of NLRP3 double-ring cage, 6-fold (12-mer)


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF13516e7lfhA1 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: PF13516ECOD (1.6)
APF17779e7lfhA5 A: alpha arraysX: HTHH: HTHT: wingedF: PF17779ECOD (1.6)
AF_UNCLASSIFIEDe7lfhA3 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: F_UNCLASSIFIEDECOD (1.6)
APF17776e7lfhA4 A: alpha superhelicesX: NLRC4 helical domain HD2 (From Topology)H: NLRC4 helical domain HD2 (From Topology)T: NLRC4 helical domain HD2F: PF17776ECOD (1.6)
APF05729,PF14484e7lfhA2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF05729,PF14484ECOD (1.6)
BPF13516e7lfhB1 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: PF13516ECOD (1.6)
BPF17779e7lfhB5 A: alpha arraysX: HTHH: HTHT: wingedF: PF17779ECOD (1.6)
BF_UNCLASSIFIEDe7lfhB3 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: F_UNCLASSIFIEDECOD (1.6)
BPF17776e7lfhB4 A: alpha superhelicesX: NLRC4 helical domain HD2 (From Topology)H: NLRC4 helical domain HD2 (From Topology)T: NLRC4 helical domain HD2F: PF17776ECOD (1.6)
BPF05729,PF14484e7lfhB2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF05729,PF14484ECOD (1.6)
CPF13516e7lfhC1 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: PF13516ECOD (1.6)
CPF17779e7lfhC5 A: alpha arraysX: HTHH: HTHT: wingedF: PF17779ECOD (1.6)
CF_UNCLASSIFIEDe7lfhC3 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: F_UNCLASSIFIEDECOD (1.6)
CPF17776e7lfhC4 A: alpha superhelicesX: NLRC4 helical domain HD2 (From Topology)H: NLRC4 helical domain HD2 (From Topology)T: NLRC4 helical domain HD2F: PF17776ECOD (1.6)
CPF05729,PF14484e7lfhC2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF05729,PF14484ECOD (1.6)
DPF13516e7lfhD1 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: PF13516ECOD (1.6)
DPF17779e7lfhD5 A: alpha arraysX: HTHH: HTHT: wingedF: PF17779ECOD (1.6)
DF_UNCLASSIFIEDe7lfhD3 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: F_UNCLASSIFIEDECOD (1.6)
DPF17776e7lfhD4 A: alpha superhelicesX: NLRC4 helical domain HD2 (From Topology)H: NLRC4 helical domain HD2 (From Topology)T: NLRC4 helical domain HD2F: PF17776ECOD (1.6)
DPF05729,PF14484e7lfhD2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF05729,PF14484ECOD (1.6)
EPF13516e7lfhE1 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: PF13516ECOD (1.6)
EPF17779e7lfhE5 A: alpha arraysX: HTHH: HTHT: wingedF: PF17779ECOD (1.6)
EF_UNCLASSIFIEDe7lfhE3 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: F_UNCLASSIFIEDECOD (1.6)
EPF17776e7lfhE4 A: alpha superhelicesX: NLRC4 helical domain HD2 (From Topology)H: NLRC4 helical domain HD2 (From Topology)T: NLRC4 helical domain HD2F: PF17776ECOD (1.6)
EPF05729,PF14484e7lfhE2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF05729,PF14484ECOD (1.6)
FPF13516e7lfhF1 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: PF13516ECOD (1.6)
FPF17779e7lfhF5 A: alpha arraysX: HTHH: HTHT: wingedF: PF17779ECOD (1.6)
FF_UNCLASSIFIEDe7lfhF3 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: F_UNCLASSIFIEDECOD (1.6)
FPF17776e7lfhF4 A: alpha superhelicesX: NLRC4 helical domain HD2 (From Topology)H: NLRC4 helical domain HD2 (From Topology)T: NLRC4 helical domain HD2F: PF17776ECOD (1.6)
FPF05729,PF14484e7lfhF2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF05729,PF14484ECOD (1.6)
GPF13516e7lfhG1 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: PF13516ECOD (1.6)
GPF17779e7lfhG5 A: alpha arraysX: HTHH: HTHT: wingedF: PF17779ECOD (1.6)
GF_UNCLASSIFIEDe7lfhG3 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: F_UNCLASSIFIEDECOD (1.6)
GPF17776e7lfhG4 A: alpha superhelicesX: NLRC4 helical domain HD2 (From Topology)H: NLRC4 helical domain HD2 (From Topology)T: NLRC4 helical domain HD2F: PF17776ECOD (1.6)
GPF05729,PF14484e7lfhG2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF05729,PF14484ECOD (1.6)
HPF13516e7lfhH1 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: PF13516ECOD (1.6)
HPF17779e7lfhH5 A: alpha arraysX: HTHH: HTHT: wingedF: PF17779ECOD (1.6)
HF_UNCLASSIFIEDe7lfhH3 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: F_UNCLASSIFIEDECOD (1.6)
HPF17776e7lfhH4 A: alpha superhelicesX: NLRC4 helical domain HD2 (From Topology)H: NLRC4 helical domain HD2 (From Topology)T: NLRC4 helical domain HD2F: PF17776ECOD (1.6)
HPF05729,PF14484e7lfhH2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF05729,PF14484ECOD (1.6)
IPF13516e7lfhI1 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: PF13516ECOD (1.6)
IPF17779e7lfhI5 A: alpha arraysX: HTHH: HTHT: wingedF: PF17779ECOD (1.6)
IF_UNCLASSIFIEDe7lfhI3 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: F_UNCLASSIFIEDECOD (1.6)
IPF17776e7lfhI4 A: alpha superhelicesX: NLRC4 helical domain HD2 (From Topology)H: NLRC4 helical domain HD2 (From Topology)T: NLRC4 helical domain HD2F: PF17776ECOD (1.6)
IPF05729,PF14484e7lfhI2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF05729,PF14484ECOD (1.6)
JPF13516e7lfhJ1 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: PF13516ECOD (1.6)
JPF17779e7lfhJ5 A: alpha arraysX: HTHH: HTHT: wingedF: PF17779ECOD (1.6)
JF_UNCLASSIFIEDe7lfhJ3 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: F_UNCLASSIFIEDECOD (1.6)
JPF17776e7lfhJ4 A: alpha superhelicesX: NLRC4 helical domain HD2 (From Topology)H: NLRC4 helical domain HD2 (From Topology)T: NLRC4 helical domain HD2F: PF17776ECOD (1.6)
JPF05729,PF14484e7lfhJ2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF05729,PF14484ECOD (1.6)
KPF13516e7lfhK1 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: PF13516ECOD (1.6)
KPF17779e7lfhK5 A: alpha arraysX: HTHH: HTHT: wingedF: PF17779ECOD (1.6)
KF_UNCLASSIFIEDe7lfhK3 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: F_UNCLASSIFIEDECOD (1.6)
KPF17776e7lfhK4 A: alpha superhelicesX: NLRC4 helical domain HD2 (From Topology)H: NLRC4 helical domain HD2 (From Topology)T: NLRC4 helical domain HD2F: PF17776ECOD (1.6)
KPF05729,PF14484e7lfhK2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF05729,PF14484ECOD (1.6)
LPF13516e7lfhL1 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: PF13516ECOD (1.6)
LPF17779e7lfhL5 A: alpha arraysX: HTHH: HTHT: wingedF: PF17779ECOD (1.6)
LF_UNCLASSIFIEDe7lfhL3 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: F_UNCLASSIFIEDECOD (1.6)
LPF17776e7lfhL4 A: alpha superhelicesX: NLRC4 helical domain HD2 (From Topology)H: NLRC4 helical domain HD2 (From Topology)T: NLRC4 helical domain HD2F: PF17776ECOD (1.6)
LPF05729,PF14484e7lfhL2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF05729,PF14484ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF05729NACHT domain (NACHT)NACHT domainThis NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation [1]. This family is closely related to Pfam:PF00931.Domain
A, B, C, D, E
PF13516Leucine Rich repeat (LRR_6)Leucine Rich repeat- Repeat
A, B, C, D, E
PF14484Fish-specific NACHT associated domain (FISNA)Fish-specific NACHT associated domain- Family
A, B, C, D, E
PF17776NLRC4 helical domain HD2 (NLRC4_HD2)NLRC4 helical domain HD2This entry represents a helical domain found in the NLRC4 protein [2] and NOD2 protein [1].Domain
A, B, C, D, E
PF17779NOD2 winged helix domain (NOD2_WH)NOD2 winged helix domainThis winged helix domain is found in the NOD2 protein [1]. Its molecular function is not known.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
NACHT, LRR and PYD domains-containing protein 3

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
A, B, C, D, E
IPR001611Leucine-rich repeatRepeat
A, B, C, D, E
IPR041075NOD2, winged helix domainDomain
A, B, C, D, E
IPR004020DAPIN domainDomain
A, B, C, D, E
IPR029495NACHT-associated domainDomain
A, B, C, D, E
IPR007111NACHT nucleoside triphosphataseDomain
A, B, C, D, E
IPR011029Death-like domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR041267NACHT, LRR and PYD domains-containing protein, helical domain HD2Domain
A, B, C, D, E
IPR032675Leucine-rich repeat domain superfamilyHomologous Superfamily