7LF7

Fab 6D12 bound to ApoL1 NTD

External Resource: Annotation

Domain Annotation: ECOD Classification
SAbDab Antibody Annotation
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: OPM
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF07654	e7lf7A2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07654	ECOD (1.6)
A	PF07686	e7lf7A1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)
B	PF07654	e7lf7B2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07654	ECOD (1.6)
B	PF07686	e7lf7B1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)
E [auth L]	PF07654	e7lf7L2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07654	ECOD (1.6)
E [auth L]	PF07686	e7lf7L1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)
C [auth H]	PF07654	e7lf7H2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07654	ECOD (1.6)
C [auth H]	PF07686	e7lf7H1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
A	Heavy Chain	IGHV5	-	apolipoprotein l1	SAbDab (2024-05-17)
B, E [auth L]	Light Chain	IGKV16	Kappa	apolipoprotein l1	SAbDab (2024-05-17)
C [auth H]	Heavy Chain	IGHV5	-	apolipoprotein l1	SAbDab (2024-05-17)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
D [auth K], F [auth M]	PF05461	Apolipoprotein L (ApoL)	Apolipoprotein L	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Fab 6D12 heavy chain	-	-	-
B, E [auth L]	Fab 6D12 light chain	-	-	-
C [auth H]	Fab 6D12 heavy chain	-	-	-
D [auth K], F [auth M]	Apolipoprotein L1	monoatomic anion transmembrane transporter activity chloride transmembrane transporter activity monoatomic ion channel activity passive transmembrane transporter activity inorganic molecular entity transmembrane transporter activity channel activity monoatomic anion channel activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity inorganic anion transmembrane transporter activity chloride channel activity binding lipid binding	biological process involved in interspecies interaction between organisms response to stimulus response to other organism defense response defense response to symbiont response to external stimulus disruption of cell in another organism response to biotic stimulus biological process involved in symbiotic interaction killing by host of symbiont cells cytolysis by host of symbiont cells defense response to other organism response to stress cellular process biological process involved in interspecies interaction between organisms response to stimulus response to other organism defense response defense response to symbiont response to external stimulus disruption of cell in another organism response to biotic stimulus biological process involved in symbiotic interaction killing by host of symbiont cells cytolysis by host of symbiont cells defense response to other organism response to stress cellular process response to external biotic stimulus disruption of anatomical structure in another organism biological process involved in interaction with symbiont killing of cells of another organism cell killing transport monoatomic ion transmembrane transport inorganic ion transmembrane transport inorganic anion transmembrane transport establishment of localization chloride transport transmembrane transport localization chloride transmembrane transport monoatomic anion transport monoatomic anion transmembrane transport monoatomic ion transport inorganic anion transport organic substance metabolic process organonitrogen compound metabolic process lipoprotein metabolic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process macromolecule localization organic substance transport lipid localization lipid transport immune response immune system process innate immune response organic hydroxy compound metabolic process sterol metabolic process steroid metabolic process cholesterol metabolic process alcohol metabolic process organic cyclic compound metabolic process secondary alcohol metabolic process small molecule metabolic process lipid metabolic process	extracellular region extracellular space cellular anatomical entity blood microparticle membrane membrane-bounded organelle intracellular anatomical structure membrane-enclosed lumen intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen endoplasmic reticulum lumen intracellular organelle organelle lumen extracellular region extracellular space cellular anatomical entity blood microparticle membrane membrane-bounded organelle intracellular anatomical structure membrane-enclosed lumen intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen endoplasmic reticulum lumen intracellular organelle organelle lumen organelle endoplasmic reticulum cytoplasm protein-containing complex plasma lipoprotein particle high-density lipoprotein particle lipoprotein particle protein-lipid complex very-low-density lipoprotein particle triglyceride-rich plasma lipoprotein particle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
D [auth K], F [auth M]	IPR008405	Apolipoprotein L	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
D [auth K], F [auth M]	Pharos: O14791	focal segmental glomerulosclerosis 4, susceptibility to pancreatic ductal adenocarcinoma tuberculosis Barrett esophagus cutaneous lupus erythematosus esophageal adenocarcinoma lung cancer Malignant neoplasm of breast osteosarcoma proteinuria ulcerative colitis chronic kidney disease diabetes mellitus human African trypanosomiasis lung carcinoma focal segmental glomerulosclerosis 4, susceptibility to pancreatic ductal adenocarcinoma tuberculosis Barrett esophagus cutaneous lupus erythematosus esophageal adenocarcinoma lung cancer Malignant neoplasm of breast osteosarcoma proteinuria ulcerative colitis chronic kidney disease diabetes mellitus human African trypanosomiasis lung carcinoma malignant pancreatic neoplasm ovarian cancer psoriasis Crohn disease end stage renal failure focal segmental glomerulosclerosis malignant mesothelioma nephritis

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
D [auth K], F [auth M]	OPM	Monotopic/peripheral	All alpha monotopic/peripheral	Alpha-helical (HDL) apolipoproteins	Apolipoprotein L

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
C [auth H]	CSX	Parent Component: CYS RESID: AA0451 PSI-MOD : 2'-(S-L-cysteinyl)-6'-hydroxy-L-tryptophan sulfoxide MOD:01380

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.