7KWG | pdb_00007kwg

Staphylococcus aureus 30S ribosomal subunit in presence of spermidine


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
I [auth h]SCOP2B SuperfamilyRibosomal protein S8 8079049 3000709 SCOP2B (2022-06-29)
H [auth g]SCOP2B SuperfamilyRibosomal protein S7 8066031 3000799 SCOP2B (2022-06-29)
G [auth f]SCOP2B SuperfamilyRibosomal protein S6 8066489 3001323 SCOP2B (2022-06-29)
E [auth d]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8083392 3001473 SCOP2B (2022-06-29)
C [auth b]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like 8099284 3001397 SCOP2B (2022-06-29)
T [auth s]SCOP2B SuperfamilyRibosomal protein S19 8086064 3000686 SCOP2B (2022-06-29)
R [auth q]SCOP2B SuperfamilyNucleic acid-binding proteins 8059272 3000135 SCOP2B (2022-06-29)
Q [auth p]SCOP2B SuperfamilyRibosomal protein S16 8066555 3000680 SCOP2B (2022-06-29)
P [auth o]SCOP2B SuperfamilyS15/NS1 RNA-binding domain 8072621 3001284 SCOP2B (2022-06-29)
M [auth l]SCOP2B SuperfamilyNucleic acid-binding proteins 8098336 3000135 SCOP2B (2022-06-29)
L [auth k]SCOP2B SuperfamilyTranslational machinery components 8099268 3000571 SCOP2B (2022-06-29)
J [auth i]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8082669 3000100 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
I [auth h]EF-hand_7e7kwgh1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: EF-hand_7ECOD (v294.1)
H [auth g]EF-hand_7e7kwgg1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: EF-hand_7ECOD (v294.1)
G [auth f]EF-hand_7e7kwgf1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: EF-hand_7ECOD (v294.1)
F [auth e]EF-hand_7e7kwge1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: EF-hand_7ECOD (v294.1)
E [auth d]EF-hand_7e7kwgd1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: EF-hand_7ECOD (v294.1)
D [auth c]EF-hand_7e7kwgc1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: EF-hand_7ECOD (v294.1)
C [auth b]EF-hand_7e7kwgb1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: EF-hand_7ECOD (v294.1)
U [auth t]EF-hand_7e7kwgt1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: EF-hand_7ECOD (v294.1)
T [auth s]EF-hand_7e7kwgs1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: EF-hand_7ECOD (v294.1)
S [auth r]EF-hand_7e7kwgr1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: EF-hand_7ECOD (v294.1)
R [auth q]EF-hand_7e7kwgq1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: EF-hand_7ECOD (v294.1)
Q [auth p]EF-hand_7e7kwgp1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: EF-hand_7ECOD (v294.1)
P [auth o]EF-hand_7e7kwgo1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: EF-hand_7ECOD (v294.1)
O [auth n]EF-hand_7e7kwgn1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: EF-hand_7ECOD (v294.1)
N [auth m]EF-hand_7e7kwgm1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: EF-hand_7ECOD (v294.1)
M [auth l]EF-hand_7e7kwgl1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: EF-hand_7ECOD (v294.1)
L [auth k]EF-hand_7e7kwgk1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: EF-hand_7ECOD (v294.1)
K [auth j]EF-hand_7e7kwgj1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: EF-hand_7ECOD (v294.1)
J [auth i]EF-hand_7e7kwgi1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: EF-hand_7ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth h]30S ribosomal protein S8
H [auth g]30S ribosomal protein S7
G [auth f]30S ribosomal protein S6
F [auth e]30S ribosomal protein S5
E [auth d]30S ribosomal protein S4
D [auth c]30S ribosomal protein S3
C [auth b]30S ribosomal protein S2
U [auth t]30S ribosomal protein S20
T [auth s]30S ribosomal protein S19
B [auth a]16S ribosomal RNA---
S [auth r]30S ribosomal protein S18
R [auth q]30S ribosomal protein S17
Q [auth p]30S ribosomal protein S16
P [auth o]30S ribosomal protein S15
O [auth n]30S ribosomal protein S14 type Z
N [auth m]30S ribosomal protein S13
M [auth l]30S ribosomal protein S12
L [auth k]30S ribosomal protein S11
K [auth j]30S ribosomal protein S10---
J [auth i]30S ribosomal protein S9
mRNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth h]IPR000630Small ribosomal subunit protein uS8Family
I [auth h]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
I [auth h]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
H [auth g]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
H [auth g]IPR000235Small ribosomal subunit protein uS7Family
H [auth g]IPR005717Small ribosomal subunit protein uS7, bacteria/organellaFamily
H [auth g]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
H [auth g]IPR023798Small ribosomal subunit protein uS7 domainDomain
G [auth f]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
G [auth f]IPR000529Small ribosomal subunit protein bS6Family
G [auth f]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
G [auth f]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
G [auth f]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
F [auth e]IPR005712Small ribosomal subunit protein uS5, bacteriaFamily
F [auth e]IPR000851Small ribosomal subunit protein uS5Family
F [auth e]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
F [auth e]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
F [auth e]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
F [auth e]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
F [auth e]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
E [auth d]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
E [auth d]IPR002942RNA-binding S4 domainDomain
E [auth d]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
E [auth d]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
E [auth d]IPR022801Small ribosomal subunit protein uS4Family
E [auth d]IPR005709Small ribosomal subunit protein uS4, bacteriaFamily
D [auth c]IPR005704Small ribosomal subunit protein uS3, bacteriaFamily
D [auth c]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
D [auth c]IPR057258Small ribosomal subunit protein uS3Family
D [auth c]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
D [auth c]IPR004087K Homology domainDomain
D [auth c]IPR004044K Homology domain, type 2Domain
D [auth c]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
D [auth c]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
D [auth c]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
C [auth b]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
C [auth b]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
C [auth b]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
C [auth b]IPR001865Small ribosomal subunit protein uS2Family
U [auth t]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
U [auth t]IPR002583Small ribosomal subunit protein bS20Family
T [auth s]IPR005732Small ribosomal subunit protein uS19, bacteriaFamily
T [auth s]IPR002222Small ribosomal subunit protein uS19Family
T [auth s]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
T [auth s]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
S [auth r]IPR001648Small ribosomal subunit protein bS18Family
S [auth r]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
S [auth r]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
R [auth q]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
R [auth q]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
R [auth q]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
R [auth q]IPR000266Small ribosomal subunit protein uS17Family
Q [auth p]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
Q [auth p]IPR000307Small ribosomal subunit protein bS16Family
P [auth o]IPR005290Small ribosomal subunit protein uS15, bacteriaFamily
P [auth o]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
P [auth o]IPR000589Small ribosomal subunit protein uS15Family
O [auth n]IPR023053Small ribosomal subunit protein uS14, bacteriaFamily
O [auth n]IPR001209Small ribosomal subunit protein uS14Family
O [auth n]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
O [auth n]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
N [auth m]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
N [auth m]IPR001892Small ribosomal subunit protein uS13Family
N [auth m]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
N [auth m]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
N [auth m]IPR019980Small ribosomal subunit protein uS13, bacteriaFamily
M [auth l]IPR006032Small ribosomal subunit protein uS12Family
M [auth l]IPR005679Ribosomal protein uS12, bacteriaFamily
M [auth l]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
L [auth k]IPR001971Small ribosomal subunit protein uS11Family
L [auth k]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
L [auth k]IPR019981Small ribosomal subunit protein uS11, bacteriaFamily
L [auth k]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
J [auth i]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
J [auth i]IPR023035Small ribosomal subunit protein uS9, bacteria/plastidFamily
J [auth i]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
J [auth i]IPR000754Small ribosomal subunit protein uS9Family
J [auth i]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily