Annotations: 7KO8

Cryo-EM structure of the mature and infective Mayaro virus

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
J	SCOP2 Family	Viral capsid proteases-like	8104184	4002263	SCOP2 (2022-06-29)
J	SCOP2 Superfamily	Trypsin-like serine proteases	8104185	3000114	SCOP2 (2022-06-29)
G	SCOP2B Superfamily	Trypsin-like serine proteases	8104185	3000114	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Trypsin-like serine proteases	8104185	3000114	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Trypsin-like serine proteases	8104185	3000114	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L [auth M]	AAA_lid_RFC1	e7ko8M1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: AAA_lid_RFC1	ECOD (v295.2)
I	AAA_lid_RFC1	e7ko8I1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: AAA_lid_RFC1	ECOD (v295.2)
F	AAA_lid_RFC1	e7ko8F1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: AAA_lid_RFC1	ECOD (v295.2)
C	Viral_Rep	e7ko8C01	A: alpha arrays	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: Viral_Rep	ECOD (v295.2)
K [auth L]	Omp85	e7ko8L1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Omp85	ECOD (v295.2)
H	Omp85	e7ko8H1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Omp85	ECOD (v295.2)
E	Omp85	e7ko8E1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Omp85	ECOD (v295.2)
B		e7ko8B1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295.2)
J	Omp85	e7ko8J1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Omp85	ECOD (v295.2)
G	Omp85	e7ko8G1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Omp85	ECOD (v295.2)
D	Omp85	e7ko8D1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Omp85	ECOD (v295.2)
A		e7ko8A1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, F, I, L [auth M]	E2 glycoprotein	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity structural molecule activity	viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host proteolysis metabolic process viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process	virion component virion membrane viral capsid icosahedral viral capsid T=4 icosahedral viral capsid host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part host intracellular part host cell cytoplasm host intracellular region
B, E, H, K [auth L]	E1 glycoprotein	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity structural molecule activity	viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host proteolysis metabolic process viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process	virion component virion membrane viral capsid icosahedral viral capsid T=4 icosahedral viral capsid host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part host intracellular part host cell cytoplasm host intracellular region
A, D, G, J	Capsid protein	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity structural molecule activity	viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host proteolysis metabolic process viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process	virion component virion membrane viral capsid icosahedral viral capsid T=4 icosahedral viral capsid host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part host intracellular part host cell cytoplasm host intracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, F, I, L [auth M]	IPR002533	Alphavirus E3 spike glycoprotein	Domain
C, F, I, L [auth M]	IPR009003	Peptidase S1, PA clan	Homologous Superfamily
C, F, I, L [auth M]	IPR042305	Alphavirus E2 glycoprotein, domain B	Homologous Superfamily
C, F, I, L [auth M]	IPR042306	Alphavirus E2 glycoprotein, domain C	Homologous Superfamily
C, F, I, L [auth M]	IPR000936	Alphavirus E2 glycoprotein	Family
C, F, I, L [auth M]	IPR038055	Flaviviral glycoprotein E, dimerisation domain	Homologous Superfamily
C, F, I, L [auth M]	IPR000930	Peptidase S3, togavirin	Domain
C, F, I, L [auth M]	IPR014756	Immunoglobulin E-set	Homologous Superfamily
C, F, I, L [auth M]	IPR042304	Alphavirus E2 glycoprotein, domain A	Homologous Superfamily
C, F, I, L [auth M]	IPR002548	Alphavirus E1 glycoprotein	Domain
C, F, I, L [auth M]	IPR000336	Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamily	Homologous Superfamily
C, F, I, L [auth M]	IPR036253	Flavivirus glycoprotein, central and dimerisation domain superfamily	Homologous Superfamily
B, E, H, K [auth L]	IPR002533	Alphavirus E3 spike glycoprotein	Domain
B, E, H, K [auth L]	IPR009003	Peptidase S1, PA clan	Homologous Superfamily
B, E, H, K [auth L]	IPR042305	Alphavirus E2 glycoprotein, domain B	Homologous Superfamily
B, E, H, K [auth L]	IPR042306	Alphavirus E2 glycoprotein, domain C	Homologous Superfamily
B, E, H, K [auth L]	IPR000936	Alphavirus E2 glycoprotein	Family
B, E, H, K [auth L]	IPR038055	Flaviviral glycoprotein E, dimerisation domain	Homologous Superfamily
B, E, H, K [auth L]	IPR000930	Peptidase S3, togavirin	Domain
B, E, H, K [auth L]	IPR014756	Immunoglobulin E-set	Homologous Superfamily
B, E, H, K [auth L]	IPR042304	Alphavirus E2 glycoprotein, domain A	Homologous Superfamily
B, E, H, K [auth L]	IPR002548	Alphavirus E1 glycoprotein	Domain
B, E, H, K [auth L]	IPR000336	Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamily	Homologous Superfamily
B, E, H, K [auth L]	IPR036253	Flavivirus glycoprotein, central and dimerisation domain superfamily	Homologous Superfamily
A, D, G, J	IPR002533	Alphavirus E3 spike glycoprotein	Domain
A, D, G, J	IPR009003	Peptidase S1, PA clan	Homologous Superfamily
A, D, G, J	IPR042305	Alphavirus E2 glycoprotein, domain B	Homologous Superfamily
A, D, G, J	IPR042306	Alphavirus E2 glycoprotein, domain C	Homologous Superfamily
A, D, G, J	IPR000936	Alphavirus E2 glycoprotein	Family
A, D, G, J	IPR038055	Flaviviral glycoprotein E, dimerisation domain	Homologous Superfamily
A, D, G, J	IPR000930	Peptidase S3, togavirin	Domain
A, D, G, J	IPR014756	Immunoglobulin E-set	Homologous Superfamily
A, D, G, J	IPR042304	Alphavirus E2 glycoprotein, domain A	Homologous Superfamily
A, D, G, J	IPR002548	Alphavirus E1 glycoprotein	Domain
A, D, G, J	IPR000336	Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamily	Homologous Superfamily
A, D, G, J	IPR036253	Flavivirus glycoprotein, central and dimerisation domain superfamily	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

7KO8 | pdb_00007ko8

Cryo-EM structure of the mature and infective Mayaro virus

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage