7KO4

Structure of cardiac native thin filament at pCa=5.8 having upper and lower troponins in Ca2+ free state

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
P	SCOP2B Superfamily	Tropomyosin	8039510	3001691	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Tropomyosin	8039510	3001691	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	Tropomyosin	8039510	3001691	SCOP2B (2022-06-29)
X	SCOP2B Superfamily	Tropomyosin	8039510	3001691	SCOP2B (2022-06-29)
CA [auth c]	SCOP2B Superfamily	EF-hand	8104309	3001983	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	EF-hand	8104309	3001983	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF00022	e7ko4A2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF00022	ECOD (1.6)
B	PF00022	e7ko4B2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF00022	ECOD (1.6)
C	PF00022	e7ko4C1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF00022	ECOD (1.6)
D	PF00022	e7ko4D1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF00022	ECOD (1.6)
E	PF00022	e7ko4E2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF00022	ECOD (1.6)
F	PF00022	e7ko4F2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF00022	ECOD (1.6)
G	PF00022	e7ko4G1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF00022	ECOD (1.6)
H	PF00022	e7ko4H2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF00022	ECOD (1.6)
I	PF00022	e7ko4I1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF00022	ECOD (1.6)
J	PF00022	e7ko4J2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF00022	ECOD (1.6)
K	PF00022	e7ko4K2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF00022	ECOD (1.6)
L	PF00022	e7ko4L2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF00022	ECOD (1.6)
M	PF00022	e7ko4M1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF00022	ECOD (1.6)
N	PF00022	e7ko4N1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF00022	ECOD (1.6)
O	PF00022	e7ko4O2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF00022	ECOD (1.6)
P	PF00261	e7ko4P1	A: alpha bundles	X: Helical domain in structural maintenance of chromosomes protein 3 (From Topology)	H: Helical domain in structural maintenance of chromosomes protein 3 (From Topology)	T: Helical domain in structural maintenance of chromosomes protein 3	F: PF00261	ECOD (1.6)
Q	PF00261	e7ko4Q1	A: alpha bundles	X: Helical domain in structural maintenance of chromosomes protein 3 (From Topology)	H: Helical domain in structural maintenance of chromosomes protein 3 (From Topology)	T: Helical domain in structural maintenance of chromosomes protein 3	F: PF00261	ECOD (1.6)
R	F_UNCLASSIFIED	e7ko4R1	A: alpha duplicates or obligate multimers	X: EB1 dimerisation domain-like (From Topology)	H: EB1 dimerisation domain-like (From Topology)	T: EB1 dimerisation domain-like	F: F_UNCLASSIFIED	ECOD (1.6)
S	F_UNCLASSIFIED	e7ko4S1	A: alpha duplicates or obligate multimers	X: EB1 dimerisation domain-like (From Topology)	H: EB1 dimerisation domain-like (From Topology)	T: EB1 dimerisation domain-like	F: F_UNCLASSIFIED	ECOD (1.6)
W	PF00261	e7ko4W1	A: alpha bundles	X: Helical domain in structural maintenance of chromosomes protein 3 (From Topology)	H: Helical domain in structural maintenance of chromosomes protein 3 (From Topology)	T: Helical domain in structural maintenance of chromosomes protein 3	F: PF00261	ECOD (1.6)
X	PF00261	e7ko4X1	A: alpha bundles	X: Helical domain in structural maintenance of chromosomes protein 3 (From Topology)	H: Helical domain in structural maintenance of chromosomes protein 3 (From Topology)	T: Helical domain in structural maintenance of chromosomes protein 3	F: PF00261	ECOD (1.6)
Y	F_UNCLASSIFIED	e7ko4Y1	A: alpha duplicates or obligate multimers	X: EB1 dimerisation domain-like (From Topology)	H: EB1 dimerisation domain-like (From Topology)	T: EB1 dimerisation domain-like	F: F_UNCLASSIFIED	ECOD (1.6)
Z	F_UNCLASSIFIED	e7ko4Z1	A: alpha duplicates or obligate multimers	X: EB1 dimerisation domain-like (From Topology)	H: EB1 dimerisation domain-like (From Topology)	T: EB1 dimerisation domain-like	F: F_UNCLASSIFIED	ECOD (1.6)
CA [auth c]	PF13499	e7ko4c2	A: alpha arrays	X: EF-hand	H: EF-hand-related	T: EF-hand	F: PF13499	ECOD (1.6)
CA [auth c]	PF13833	e7ko4c1	A: alpha arrays	X: EF-hand	H: EF-hand-related	T: EF-hand	F: PF13833	ECOD (1.6)
V	PF13499	e7ko4V1	A: alpha arrays	X: EF-hand	H: EF-hand-related	T: EF-hand	F: PF13499	ECOD (1.6)
V	PF13833	e7ko4V2	A: alpha arrays	X: EF-hand	H: EF-hand-related	T: EF-hand	F: PF13833	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	PF00022	Actin (Actin)	Actin	-	Family
AA [auth a], T	PF00992	Troponin (Troponin)	Troponin	-	Family
BA [auth b], U	PF00992	Troponin (Troponin)	Troponin	-	Family
P, Q, R, S, W P, Q, R, S, W, X, Y, Z	PF00261	Tropomyosin (Tropomyosin)	Tropomyosin	-	Coiled-coil
CA [auth c], V	PF13833	EF-hand domain pair (EF-hand_8)	EF-hand domain pair	-	Domain
CA [auth c], V	PF13499	EF-hand domain pair (EF-hand_7)	EF-hand domain pair	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	Actin, alpha skeletal muscle	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding hydrolase activity catalytic activity	developmental process mesenchyme migration multicellular organismal process mesenchyme morphogenesis animal organ development mesenchyme development tissue development tissue morphogenesis anatomical structure morphogenesis tissue migration anatomical structure development animal organ morphogenesis myotube cell development skeletal muscle fiber development developmental process mesenchyme migration multicellular organismal process mesenchyme morphogenesis animal organ development mesenchyme development tissue development tissue morphogenesis anatomical structure morphogenesis tissue migration anatomical structure development animal organ morphogenesis myotube cell development skeletal muscle fiber development cellular developmental process skeletal muscle tissue development cell development muscle cell differentiation myotube differentiation muscle structure development skeletal muscle organ development muscle cell development cell differentiation cellular process muscle tissue development muscle organ development striated muscle cell differentiation regulation of cellular process cellular biosynthetic process positive regulation of biological process positive regulation of cellular metabolic process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process organic substance metabolic process positive regulation of biosynthetic process organic substance biosynthetic process positive regulation of macromolecule metabolic process positive regulation of cellular process regulation of biosynthetic process regulation of biological process cellular metabolic process biological regulation regulation of cellular metabolic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of cellular biosynthetic process regulation of gene expression biosynthetic process positive regulation of gene expression regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of metabolic process positive regulation of cellular biosynthetic process cellular component assembly involved in morphogenesis non-membrane-bounded organelle assembly skeletal myofibril assembly cellular component organization cellular component biogenesis striated muscle cell development cellular anatomical entity morphogenesis cellular component assembly actin filament-based process cellular component organization or biogenesis skeletal muscle thin filament assembly actin cytoskeleton organization actomyosin structure organization organelle assembly actin filament organization organelle organization myofibril assembly anatomical structure formation involved in morphogenesis supramolecular fiber organization cytoskeleton organization	cell projection cell leading edge cellular anatomical entity plasma membrane bounded cell projection lamellipodium intracellular anatomical structure actin filament bundle actin cytoskeleton actomyosin intracellular organelle cytoskeleton organelle intracellular non-membrane-bounded organelle stress fiber cell projection cell leading edge cellular anatomical entity plasma membrane bounded cell projection lamellipodium intracellular anatomical structure actin filament bundle actin cytoskeleton actomyosin intracellular organelle cytoskeleton organelle intracellular non-membrane-bounded organelle stress fiber contractile actin filament bundle non-membrane-bounded organelle polymeric cytoskeletal fiber actin filament supramolecular fiber supramolecular polymer supramolecular complex cell body striated muscle thin filament myofilament sarcomere contractile muscle fiber cytoplasm myofibril actin-based cell projection filopodium
AA [auth a], T	Isoform 4 of Troponin T, cardiac muscle	-	multicellular organismal process system process regulation of biological process regulation of muscle contraction regulation of system process biological regulation regulation of multicellular organismal process muscle contraction regulation of muscle system process muscle system process	striated muscle thin filament protein-containing complex intracellular anatomical structure myofilament cellular anatomical entity actin cytoskeleton sarcomere intracellular organelle troponin complex cytoskeleton organelle intracellular non-membrane-bounded organelle contractile muscle fiber cytoplasm striated muscle thin filament protein-containing complex intracellular anatomical structure myofilament cellular anatomical entity actin cytoskeleton sarcomere intracellular organelle troponin complex cytoskeleton organelle intracellular non-membrane-bounded organelle contractile muscle fiber cytoplasm supramolecular fiber myofibril supramolecular polymer supramolecular complex non-membrane-bounded organelle
BA [auth b], U	Troponin I, cardiac muscle	-	-	-
P, Q, R, S, W P, Q, R, S, W, X, Y, Z	Tropomyosin alpha-1 chain	protein heterodimerization activity protein binding binding protein dimerization activity cytoskeletal protein binding actin binding protein-containing complex binding actin filament binding identical protein binding protein homodimerization activity	cellular component organization organelle organization actin cytoskeleton organization actin filament organization actin filament-based process cellular process cellular component organization or biogenesis supramolecular fiber organization cytoskeleton organization heart process multicellular organismal process system process circulatory system process cardiac muscle contraction cellular component organization organelle organization actin cytoskeleton organization actin filament organization actin filament-based process cellular process cellular component organization or biogenesis supramolecular fiber organization cytoskeleton organization heart process multicellular organismal process system process circulatory system process cardiac muscle contraction heart contraction muscle contraction muscle system process blood circulation striated muscle contraction	polymeric cytoskeletal fiber intracellular anatomical structure actin filament cellular anatomical entity actin cytoskeleton intracellular organelle cytoskeleton organelle intracellular non-membrane-bounded organelle supramolecular fiber supramolecular polymer supramolecular complex non-membrane-bounded organelle cytoplasm
CA [auth c], V	Troponin C	cytoskeletal protein binding protein binding binding troponin T binding cation binding ion binding calcium ion binding metal ion binding small molecule binding actin binding protein-containing complex binding actin filament binding identical protein binding protein homodimerization activity cytoskeletal protein binding protein binding binding troponin T binding cation binding ion binding calcium ion binding metal ion binding small molecule binding actin binding protein-containing complex binding actin filament binding identical protein binding protein homodimerization activity protein dimerization activity calcium-dependent protein binding troponin I binding	regulation of muscle adaptation multicellular organismal process striated muscle adaptation system process regulation of biological process response to stimulus transition between fast and slow fiber regulation of skeletal muscle adaptation regulation of system process biological regulation muscle system process regulation of muscle system process muscle adaptation regulation of response to stimulus skeletal muscle adaptation regulation of muscle adaptation multicellular organismal process striated muscle adaptation system process regulation of biological process response to stimulus transition between fast and slow fiber regulation of skeletal muscle adaptation regulation of system process biological regulation muscle system process regulation of muscle system process muscle adaptation regulation of response to stimulus skeletal muscle adaptation regulation of multicellular organismal process heart process circulatory system process cardiac muscle contraction heart contraction muscle contraction blood circulation striated muscle contraction multicellular organismal movement musculoskeletal movement nervous system process neuromuscular process skeletal muscle contraction ventricular cardiac muscle tissue morphogenesis heart morphogenesis striated muscle tissue development muscle structure development multicellular organism development ventricular cardiac muscle tissue development anatomical structure development cardiac chamber development animal organ morphogenesis muscle tissue development muscle organ development system development developmental process heart development cardiac chamber morphogenesis cardiac muscle tissue development animal organ development tissue development muscle tissue morphogenesis circulatory system development anatomical structure morphogenesis tissue morphogenesis cardiac ventricle morphogenesis cardiac muscle tissue morphogenesis cardiac ventricle development muscle organ morphogenesis regulation of localization cellular localization regulation of cellular process regulation of actin filament-based process transport muscle filament sliding localization establishment of localization in cell actin filament-based process regulation of biological quality regulation of intracellular transport actin-myosin filament sliding regulation of transport regulation of muscle filament sliding speed intracellular transport actin filament-based movement establishment of localization regulation of muscle contraction regulation of cellular localization regulation of actin filament-based movement cellular process regulation of muscle filament sliding actin-mediated cell contraction	striated muscle thin filament protein-containing complex intracellular anatomical structure myofilament cellular anatomical entity actin cytoskeleton sarcomere intracellular organelle troponin complex cytoskeleton organelle intracellular non-membrane-bounded organelle contractile muscle fiber cardiac Troponin complex striated muscle thin filament protein-containing complex intracellular anatomical structure myofilament cellular anatomical entity actin cytoskeleton sarcomere intracellular organelle troponin complex cytoskeleton organelle intracellular non-membrane-bounded organelle contractile muscle fiber cardiac Troponin complex cytoplasm supramolecular fiber myofibril supramolecular polymer supramolecular complex non-membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	IPR020902	Actin/actin-like conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	IPR004001	Actin, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	IPR043129	ATPase, nucleotide binding domain	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	IPR004000	Actin family	Family
AA [auth a], T	IPR027707	Troponin T	Family
AA [auth a], T	IPR001978	Troponin	Family
AA [auth a], T	IPR038077	Troponin domain superfamily	Homologous Superfamily
P, Q, R, S, W P, Q, R, S, W, X, Y, Z	IPR000533	Tropomyosin	Family
CA [auth c], V	IPR018247	EF-Hand 1, calcium-binding site	Binding Site
CA [auth c], V	IPR002048	EF-hand domain	Domain
CA [auth c], V	IPR011992	EF-hand domain pair	Homologous Superfamily