7KNS | pdb_00007kns

Cryo-EM structure of jack bean urease


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
FPLN02303_like,Urease_betae7knsF4 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Urease, beta-subunit (From Topology)T: Urease, beta-subunitF: PLN02303_like,Urease_betaECOD (1.6)
FUrease_alphae7knsF3 A: beta sandwichesX: Composite domain of metallo-dependent hydrolases (From Topology)H: Composite domain of metallo-dependent hydrolases (From Topology)T: Composite domain of metallo-dependent hydrolasesF: Urease_alphaECOD (1.6)
FUrease_gammae7knsF2 A: a+b two layersX: Urease, gamma-subunit (From Topology)H: Urease, gamma-subunit (From Topology)T: Urease, gamma-subunitF: Urease_gammaECOD (1.6)
FAmidohydro_1_Ne7knsF1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: Amidohydro_1_NECOD (1.6)
EPLN02303_like,Urease_betae7knsE3 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Urease, beta-subunit (From Topology)T: Urease, beta-subunitF: PLN02303_like,Urease_betaECOD (1.6)
EUrease_alphae7knsE2 A: beta sandwichesX: Composite domain of metallo-dependent hydrolases (From Topology)H: Composite domain of metallo-dependent hydrolases (From Topology)T: Composite domain of metallo-dependent hydrolasesF: Urease_alphaECOD (1.6)
EUrease_gammae7knsE4 A: a+b two layersX: Urease, gamma-subunit (From Topology)H: Urease, gamma-subunit (From Topology)T: Urease, gamma-subunitF: Urease_gammaECOD (1.6)
EAmidohydro_1_Ne7knsE1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: Amidohydro_1_NECOD (1.6)
DPLN02303_like,Urease_betae7knsD1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Urease, beta-subunit (From Topology)T: Urease, beta-subunitF: PLN02303_like,Urease_betaECOD (1.6)
DUrease_alphae7knsD2 A: beta sandwichesX: Composite domain of metallo-dependent hydrolases (From Topology)H: Composite domain of metallo-dependent hydrolases (From Topology)T: Composite domain of metallo-dependent hydrolasesF: Urease_alphaECOD (1.6)
DUrease_gammae7knsD3 A: a+b two layersX: Urease, gamma-subunit (From Topology)H: Urease, gamma-subunit (From Topology)T: Urease, gamma-subunitF: Urease_gammaECOD (1.6)
DAmidohydro_1_Ne7knsD4 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: Amidohydro_1_NECOD (1.6)
CPLN02303_like,Urease_betae7knsC2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Urease, beta-subunit (From Topology)T: Urease, beta-subunitF: PLN02303_like,Urease_betaECOD (1.6)
CUrease_alphae7knsC3 A: beta sandwichesX: Composite domain of metallo-dependent hydrolases (From Topology)H: Composite domain of metallo-dependent hydrolases (From Topology)T: Composite domain of metallo-dependent hydrolasesF: Urease_alphaECOD (1.6)
CUrease_gammae7knsC1 A: a+b two layersX: Urease, gamma-subunit (From Topology)H: Urease, gamma-subunit (From Topology)T: Urease, gamma-subunitF: Urease_gammaECOD (1.6)
CAmidohydro_1_Ne7knsC4 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: Amidohydro_1_NECOD (1.6)
BPLN02303_like,Urease_betae7knsB1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Urease, beta-subunit (From Topology)T: Urease, beta-subunitF: PLN02303_like,Urease_betaECOD (1.6)
BUrease_alphae7knsB2 A: beta sandwichesX: Composite domain of metallo-dependent hydrolases (From Topology)H: Composite domain of metallo-dependent hydrolases (From Topology)T: Composite domain of metallo-dependent hydrolasesF: Urease_alphaECOD (1.6)
BUrease_gammae7knsB4 A: a+b two layersX: Urease, gamma-subunit (From Topology)H: Urease, gamma-subunit (From Topology)T: Urease, gamma-subunitF: Urease_gammaECOD (1.6)
BAmidohydro_1_Ne7knsB3 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: Amidohydro_1_NECOD (1.6)
APLN02303_like,Urease_betae7knsA3 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Urease, beta-subunit (From Topology)T: Urease, beta-subunitF: PLN02303_like,Urease_betaECOD (1.6)
AUrease_alphae7knsA4 A: beta sandwichesX: Composite domain of metallo-dependent hydrolases (From Topology)H: Composite domain of metallo-dependent hydrolases (From Topology)T: Composite domain of metallo-dependent hydrolasesF: Urease_alphaECOD (1.6)
AUrease_gammae7knsA2 A: a+b two layersX: Urease, gamma-subunit (From Topology)H: Urease, gamma-subunit (From Topology)T: Urease, gamma-subunitF: Urease_gammaECOD (1.6)
AAmidohydro_1_Ne7knsA1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: Amidohydro_1_NECOD (1.6)

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR029754Urease nickel binding siteBinding Site
A, B, C, D, E
IPR017950Urease active siteActive Site
A, B, C, D, E
IPR040881Urease subunit beta-alpha, linker domainDomain
A, B, C, D, E
IPR008221UreaseFamily
A, B, C, D, E
IPR006680Amidohydrolase-relatedDomain
A, B, C, D, E
IPR011059Metal-dependent hydrolase, composite domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR032466Metal-dependent hydrolaseHomologous Superfamily
A, B, C, D, E
IPR036463Urease, gamma subunit superfamilyHomologous Superfamily
A, B, C, D, E
IPR011612Urease alpha-subunit, N-terminal domainDomain
A, B, C, D, E
IPR002019Urease, beta subunit-likeFamily
A, B, C, D, E
IPR036461Urease, beta subunit superfamilyHomologous Superfamily
A, B, C, D, E
IPR050112Urease Alpha SubunitFamily
A, B, C, D, E
IPR005848Urease, alpha subunitFamily
A, B, C, D, E
IPR002026Urease, gamma/gamma-beta subunitFamily
A, B, C, D, E
IPR017951Urease alpha subunit, C-terminalDomain