Crystal structure of M4H2K1 Fab bound to HIV-1 BG505 gp120 core and to 17b Fab
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| E [auth A] | 14-3-3 | e7klcA1 | A: a/b three-layered sandwiches | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: 14-3-3 | ECOD (v294.1) |
| D | 14-3-3 | e7klcD1 | A: a/b three-layered sandwiches | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: 14-3-3 | ECOD (v294.1) |
| C | 14-3-3 | e7klcC1 | A: a/b three-layered sandwiches | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: 14-3-3 | ECOD (v294.1) |
| B [auth L] | 14-3-3 | e7klcL1 | A: a/b three-layered sandwiches | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: 14-3-3 | ECOD (v294.1) |
| A [auth H] | 14-3-3 | e7klcH1 | A: a/b three-layered sandwiches | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: 14-3-3 | ECOD (v294.1) |
SAbDab Antibody Annotation SAbDab Database Homepage
| Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
|---|---|---|---|---|---|
| Heavy Chain | IGHV1 | - | hiv-1 clade a bg505 gp120,hiv-1 clade a bg505 gp120 | SAbDab (2026-04-10) | |
| Light Chain | IGKV3 | Kappa | hiv-1 clade a bg505 gp120,hiv-1 clade a bg505 gp120 | SAbDab (2026-04-10) | |
| B [auth L] | Light Chain | IGKV3 | Kappa | hiv-1 clade a bg505 gp120,hiv-1 clade a bg505 gp120 | SAbDab (2026-04-10) |
| A [auth H] | Heavy Chain | IGHV6 | - | hiv-1 clade a bg505 gp120,hiv-1 clade a bg505 gp120 | SAbDab (2026-04-10) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| E [auth A] | IPR000777 | Human immunodeficiency virus 1, envelope glycoprotein Gp120 | Domain |
| E [auth A] | IPR036377 | Gp120 core superfamily | Homologous Superfamily |
| E [auth A] | IPR000328 | Retroviral envelope protein GP41-like | Domain |
| E [auth A] | IPR037527 | Envelope glycoprotein Gp160 | Family |














