Adeno-Associated Virus (AAV-DJ) - cryo-EM structure at 1.56 Angstrom Resolution
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | d7kfra_ | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | ssDNA viruses | Parvoviridae-like VP | automated matches | (Adeno-associated virus ) [TaxId: 272636 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | Parvo_coat | e7kfrA1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Parvo_coat | ECOD (1.6) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Capsid protein VP1 | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR013607 | Phospholipase A2-like domain | Domain | |
| IPR016184 | Capsid/spike protein, ssDNA virus | Homologous Superfamily | |
| IPR001403 | Coat protein VP1/VP2, Parvovirus | Domain | |
| IPR036952 | Parvovirus coat protein VP1/VP2 | Homologous Superfamily |
