7K22 | pdb_00007k22

Murine polyomavirus pentavalent capsomer with 8A7H5 Fab, subparticle reconstruction

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
O [auth F5]	SCOP2B Superfamily	Group I dsDNA viruses	8096612	3000939	SCOP2B (2022-06-29)
L [auth F4]	SCOP2B Superfamily	Group I dsDNA viruses	8096612	3000939	SCOP2B (2022-06-29)
I [auth F3]	SCOP2B Superfamily	Group I dsDNA viruses	8096612	3000939	SCOP2B (2022-06-29)
F [auth F2]	SCOP2B Superfamily	Group I dsDNA viruses	8096612	3000939	SCOP2B (2022-06-29)
C [auth F1]	SCOP2B Superfamily	Group I dsDNA viruses	8096612	3000939	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
N [auth H5]	V-set_12	e7k22H51	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_12	ECOD (1.6)
K [auth H4]	V-set_12	e7k22H41	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_12	ECOD (1.6)
H [auth H3]	V-set_12	e7k22H31	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_12	ECOD (1.6)
E [auth H2]	V-set_12	e7k22H21	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_12	ECOD (1.6)
B [auth H1]	V-set_12	e7k22H11	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_12	ECOD (1.6)
M [auth L5]	V-set	e7k22L51	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set	ECOD (1.6)
J [auth L4]	V-set	e7k22L41	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set	ECOD (1.6)
G [auth L3]	V-set	e7k22L31	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set	ECOD (1.6)
D [auth L2]	V-set	e7k22L21	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set	ECOD (1.6)
A [auth L1]	V-set	e7k22L11	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C [auth F1], F [auth F2], I [auth F3], L [auth F4], O [auth F5]	PF00718	Polyomavirus coat protein (Polyoma_coat)	Polyomavirus coat protein		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth F1], F [auth F2], I [auth F3], L [auth F4], O [auth F5]	Capsid protein VP1	structural molecule activity	virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host endocytosis involved in viral entry into host cell	viral capsid icosahedral viral capsid T=7 icosahedral viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle
B [auth H1], E [auth H2], H [auth H3], K [auth H4], N [auth H5]	8A7H5 Fab heavy chain	-	-	-
A [auth L1], D [auth L2], G [auth L3], J [auth L4], M [auth L5]	8A7H5 Fab light chain	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth F1], F [auth F2], I [auth F3], L [auth F4], O [auth F5]	IPR011222	Double-stranded DNA virus, group I, capsid	Homologous Superfamily
C [auth F1], F [auth F2], I [auth F3], L [auth F4], O [auth F5]	IPR000662	Capsid protein VP1,Polyomavirus	Family
C [auth F1], F [auth F2], I [auth F3], L [auth F4], O [auth F5]	IPR036931	Polyomavirus capsid protein VP1 superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.