7JSL | pdb_00007jsl

Crystal structure of the DNA binding domain of human transcription factor ERF in the oxidized form, in complex with double-stranded DNA ACCGGAAGTG

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C [auth J]	RIIa	e7jslJ1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: RIIa	ECOD (v294.1)
F [auth E]	RIIa	e7jslE1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: RIIa	ECOD (v294.1)
I [auth H]	RIIa	e7jslH1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: RIIa	ECOD (v294.1)
L	RIIa	e7jslL1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: RIIa	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C [auth J], F [auth E], I [auth H], L	PF00178	Ets-domain (Ets)	Ets-domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth J], F [auth E], I [auth H], L	ETS domain-containing transcription factor ERF	DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity DNA-binding transcription repressor activity, RNA polymerase II-specific DNA-binding transcription repressor activity sequence-specific DNA binding DNA binding binding nucleic acid binding	developmental process cellular developmental process cell differentiation cellular process regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II regulation of nucleobase-containing compound metabolic process developmental process cellular developmental process cell differentiation cellular process regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process negative regulation of biological process negative regulation of RNA biosynthetic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process negative regulation of macromolecule metabolic process negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of metabolic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of RNA metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen membraneless organelle intracellular membraneless organelle chromatin chromosome
B [auth C], E [auth D], H [auth G], K	DNA (5'-D(CPAPCPTPTPCPCPGPGPT)-3')	-	-	-
A [auth B], D [auth A], G [auth F], J [auth I]	DNA (5'-D(APCPCPGPGPAPAPGPTPG)-3')	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth J], F [auth E], I [auth H], L	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
C [auth J], F [auth E], I [auth H], L	IPR000418	Ets domain	Domain
C [auth J], F [auth E], I [auth H], L	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
C [auth J], F [auth E], I [auth H], L	IPR046328	ETS family	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C [auth J], F [auth E], I [auth H], L	Pharos: P50548	craniosynostosis craniosynostosis 4 Chitayat syndrome Craniofacial Abnormalities prostate cancer Chiari malformation intellectual disability isolated scaphocephaly medulloblastoma prostate carcinoma auditory perceptual disorders Chiari malformation type II Hodgkins lymphoma invasive ductal breast carcinoma Crouzon syndrome craniosynostosis craniosynostosis 4 Chitayat syndrome Craniofacial Abnormalities prostate cancer Chiari malformation intellectual disability isolated scaphocephaly medulloblastoma prostate carcinoma auditory perceptual disorders Chiari malformation type II Hodgkins lymphoma invasive ductal breast carcinoma Crouzon syndrome hydrocephalus isolated cloverleaf skull syndrome psoriasis trigonocephaly atypical teratoid rhabdoid tumor familial lambdoid synostosis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.