7JPN | pdb_00007jpn

Cryo-EM structure of Arpin-bound Arp2/3 complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
GSCOP2 FamilyArp2/3 complex 16 kDa subunit ARPC5 8106536 4002906 SCOP2 (2022-06-29)
GSCOP2 SuperfamilyArp2/3 complex 16 kDa subunit ARPC5 8106537 3001882 SCOP2 (2022-06-29)
FSCOP2B SuperfamilyArp2/3 complex subunits 8037903 3000751 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyArp2/3 complex 21 kDa subunit ARPC3 8037901 3001830 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyArp2/3 complex subunits 8037898 3000751 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyArp2/3 complex subunits 8037899 3000751 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyWD40 repeat-like 8037895 3001694 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyActin-like ATPases 8037893 3000092 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyActin-like ATPases 8037891 3000092 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyActin-like ATPases 8037889 3000092 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
GWD40, eIF2A, ANAPC4_WD40e7jpnG1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: WD40, eIF2A, ANAPC4_WD40ECOD (v294.1)
FWD40, eIF2A, ANAPC4_WD40e7jpnF1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: WD40, eIF2A, ANAPC4_WD40ECOD (v294.1)
EWD40, eIF2A, ANAPC4_WD40e7jpnE1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: WD40, eIF2A, ANAPC4_WD40ECOD (v294.1)
DWD40, eIF2A, ANAPC4_WD40e7jpnD1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: WD40, eIF2A, ANAPC4_WD40ECOD (v294.1)
CWD40, eIF2A, ANAPC4_WD40e7jpnC1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: WD40, eIF2A, ANAPC4_WD40ECOD (v294.1)
BWD40, eIF2A, ANAPC4_WD40e7jpnB1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: WD40, eIF2A, ANAPC4_WD40ECOD (v294.1)
AWD40, eIF2A, ANAPC4_WD40e7jpnA1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: WD40, eIF2A, ANAPC4_WD40ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
C2.130.10.10 Mainly Beta 7 Propeller Methylamine Dehydrogenase Chain HCATH (utative)
A3.90.640.10 Alpha Beta Alpha-Beta Complex Actin Chain A, domain 4CATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF04045Arp2/3 complex, 34 kD subunit p34-Arc (P34-Arc)Arp2/3 complex, 34 kD subunit p34-Arc- Family
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
PF00022Actin (Actin)Actin- Family
PF00022Actin (Actin)Actin- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Arpin-
Actin-related protein 2/3 complex subunit 5
Actin-related protein 2/3 complex subunit 4
Actin-related protein 2/3 complex subunit 3
Actin-related protein 2/3 complex subunit 2
Actin-related protein 2/3 complex subunit 1B
Actin-related protein 2
Actin-related protein 3