Crystal Structure of the essential dimeric LYSA from Phaeodactylum tricornutum
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | 14-3-3 | e7jpjB1 | A: a/b three-layered sandwiches | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: 14-3-3 | ECOD (v294.1) |
| A | Acetyltransf_1 | e7jpjA1 | A: a/b three-layered sandwiches | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: Acetyltransf_1 | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 3.20.20.10 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Alanine racemase | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF02784 | Pyridoxal-dependent decarboxylase, pyridoxal binding domain (Orn_Arg_deC_N) | Pyridoxal-dependent decarboxylase, pyridoxal binding domain | These pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates This domain has a TIM barrel fold. | Domain | |
| PF00278 | Pyridoxal-dependent decarboxylase, C-terminal sheet domain (Orn_DAP_Arg_deC) | Pyridoxal-dependent decarboxylase, C-terminal sheet domain | These pyridoxal-dependent decarboxylases act on ornithine, lysine, arginine and related substrates. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Diaminopimelate decarboxylase | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR029066 | PLP-binding barrel | Homologous Superfamily | |
| IPR009006 | Alanine racemase/group IV decarboxylase, C-terminal | Homologous Superfamily | |
| IPR000183 | Ornithine/DAP/Arg decarboxylase | Family | |
| IPR022644 | Orn/DAP/Arg decarboxylase 2, N-terminal | Domain | |
| IPR002986 | Diaminopimelate decarboxylase, LysA | Family |














