Annotations: 7JN4

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
P	d7jn4p_	Alpha and beta proteins (a+b)	RuBisCO, small subunit	RuBisCO, small subunit	RuBisCO, small subunit	automated matches	(Chlamydomonas reinhardtii ) [TaxId: 3055 ],	SCOPe (2.08)
N	d7jn4n_	Alpha and beta proteins (a+b)	RuBisCO, small subunit	RuBisCO, small subunit	RuBisCO, small subunit	automated matches	(Chlamydomonas reinhardtii ) [TaxId: 3055 ],	SCOPe (2.08)
L	d7jn4l_	Alpha and beta proteins (a+b)	RuBisCO, small subunit	RuBisCO, small subunit	RuBisCO, small subunit	automated matches	(Chlamydomonas reinhardtii ) [TaxId: 3055 ],	SCOPe (2.08)
J	d7jn4j_	Alpha and beta proteins (a+b)	RuBisCO, small subunit	RuBisCO, small subunit	RuBisCO, small subunit	automated matches	(Chlamydomonas reinhardtii ) [TaxId: 3055 ],	SCOPe (2.08)
H	d7jn4h_	Alpha and beta proteins (a+b)	RuBisCO, small subunit	RuBisCO, small subunit	RuBisCO, small subunit	automated matches	(Chlamydomonas reinhardtii ) [TaxId: 3055 ],	SCOPe (2.08)
F	d7jn4f_	Alpha and beta proteins (a+b)	RuBisCO, small subunit	RuBisCO, small subunit	RuBisCO, small subunit	automated matches	(Chlamydomonas reinhardtii ) [TaxId: 3055 ],	SCOPe (2.08)
D	d7jn4d_	Alpha and beta proteins (a+b)	RuBisCO, small subunit	RuBisCO, small subunit	RuBisCO, small subunit	automated matches	(Chlamydomonas reinhardtii ) [TaxId: 3055 ],	SCOPe (2.08)
B	d7jn4b_	Alpha and beta proteins (a+b)	RuBisCO, small subunit	RuBisCO, small subunit	RuBisCO, small subunit	automated matches	(Chlamydomonas reinhardtii ) [TaxId: 3055 ],	SCOPe (2.08)
O	d7jn4o2	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	RuBisCo, C-terminal domain	RuBisCo, large subunit, C-terminal domain	Ribulose 1,5-bisphosphate carboxylase-oxygenase	(Chlamydomonas reinhardtii ) [TaxId: 3055 ],	SCOPe (2.08)
O	d7jn4o1	Alpha and beta proteins (a+b)	Ferredoxin-like	RuBisCO, large subunit, small (N-terminal) domain	Ribulose 1,5-bisphosphate carboxylase-oxygenase	Ribulose 1,5-bisphosphate carboxylase-oxygenase	(Chlamydomonas reinhardtii ) [TaxId: 3055 ],	SCOPe (2.08)
M	d7jn4m2	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	RuBisCo, C-terminal domain	RuBisCo, large subunit, C-terminal domain	Ribulose 1,5-bisphosphate carboxylase-oxygenase	(Chlamydomonas reinhardtii ) [TaxId: 3055 ],	SCOPe (2.08)
M	d7jn4m1	Alpha and beta proteins (a+b)	Ferredoxin-like	RuBisCO, large subunit, small (N-terminal) domain	Ribulose 1,5-bisphosphate carboxylase-oxygenase	Ribulose 1,5-bisphosphate carboxylase-oxygenase	(Chlamydomonas reinhardtii ) [TaxId: 3055 ],	SCOPe (2.08)
K	d7jn4k2	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	RuBisCo, C-terminal domain	RuBisCo, large subunit, C-terminal domain	Ribulose 1,5-bisphosphate carboxylase-oxygenase	(Chlamydomonas reinhardtii ) [TaxId: 3055 ],	SCOPe (2.08)
K	d7jn4k1	Alpha and beta proteins (a+b)	Ferredoxin-like	RuBisCO, large subunit, small (N-terminal) domain	Ribulose 1,5-bisphosphate carboxylase-oxygenase	Ribulose 1,5-bisphosphate carboxylase-oxygenase	(Chlamydomonas reinhardtii ) [TaxId: 3055 ],	SCOPe (2.08)
I	d7jn4i2	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	RuBisCo, C-terminal domain	RuBisCo, large subunit, C-terminal domain	Ribulose 1,5-bisphosphate carboxylase-oxygenase	(Chlamydomonas reinhardtii ) [TaxId: 3055 ],	SCOPe (2.08)
I	d7jn4i1	Alpha and beta proteins (a+b)	Ferredoxin-like	RuBisCO, large subunit, small (N-terminal) domain	Ribulose 1,5-bisphosphate carboxylase-oxygenase	Ribulose 1,5-bisphosphate carboxylase-oxygenase	(Chlamydomonas reinhardtii ) [TaxId: 3055 ],	SCOPe (2.08)
G	d7jn4g2	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	RuBisCo, C-terminal domain	RuBisCo, large subunit, C-terminal domain	Ribulose 1,5-bisphosphate carboxylase-oxygenase	(Chlamydomonas reinhardtii ) [TaxId: 3055 ],	SCOPe (2.08)
G	d7jn4g1	Alpha and beta proteins (a+b)	Ferredoxin-like	RuBisCO, large subunit, small (N-terminal) domain	Ribulose 1,5-bisphosphate carboxylase-oxygenase	Ribulose 1,5-bisphosphate carboxylase-oxygenase	(Chlamydomonas reinhardtii ) [TaxId: 3055 ],	SCOPe (2.08)
E	d7jn4e2	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	RuBisCo, C-terminal domain	RuBisCo, large subunit, C-terminal domain	Ribulose 1,5-bisphosphate carboxylase-oxygenase	(Chlamydomonas reinhardtii ) [TaxId: 3055 ],	SCOPe (2.08)
E	d7jn4e1	Alpha and beta proteins (a+b)	Ferredoxin-like	RuBisCO, large subunit, small (N-terminal) domain	Ribulose 1,5-bisphosphate carboxylase-oxygenase	Ribulose 1,5-bisphosphate carboxylase-oxygenase	(Chlamydomonas reinhardtii ) [TaxId: 3055 ],	SCOPe (2.08)
C	d7jn4c2	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	RuBisCo, C-terminal domain	RuBisCo, large subunit, C-terminal domain	Ribulose 1,5-bisphosphate carboxylase-oxygenase	(Chlamydomonas reinhardtii ) [TaxId: 3055 ],	SCOPe (2.08)
C	d7jn4c1	Alpha and beta proteins (a+b)	Ferredoxin-like	RuBisCO, large subunit, small (N-terminal) domain	Ribulose 1,5-bisphosphate carboxylase-oxygenase	Ribulose 1,5-bisphosphate carboxylase-oxygenase	(Chlamydomonas reinhardtii ) [TaxId: 3055 ],	SCOPe (2.08)
A	d7jn4a2	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	RuBisCo, C-terminal domain	RuBisCo, large subunit, C-terminal domain	Ribulose 1,5-bisphosphate carboxylase-oxygenase	(Chlamydomonas reinhardtii ) [TaxId: 3055 ],	SCOPe (2.08)
A	d7jn4a1	Alpha and beta proteins (a+b)	Ferredoxin-like	RuBisCO, large subunit, small (N-terminal) domain	Ribulose 1,5-bisphosphate carboxylase-oxygenase	Ribulose 1,5-bisphosphate carboxylase-oxygenase	(Chlamydomonas reinhardtii ) [TaxId: 3055 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
P	SCOP2B Superfamily	RuBisCO, small subunit	8069973	3001622	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	RuBisCO, small subunit	8069973	3001622	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	RuBisCO, small subunit	8069973	3001622	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	RuBisCO, small subunit	8069973	3001622	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	RuBisCO, small subunit	8069973	3001622	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	RuBisCO, small subunit	8069973	3001622	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	RuBisCO, small subunit	8069973	3001622	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	RuBisCO, small subunit	8069973	3001622	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035891	3001258	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	RuBisCo, C-terminal domain	8035888	3000552	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035891	3001258	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	RuBisCo, C-terminal domain	8035888	3000552	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	RuBisCo, C-terminal domain	8035888	3000552	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035891	3001258	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035891	3001258	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	RuBisCo, C-terminal domain	8035888	3000552	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	RuBisCo, C-terminal domain	8035888	3000552	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035891	3001258	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	RuBisCo, C-terminal domain	8035888	3000552	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035891	3001258	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	RuBisCo, C-terminal domain	8035888	3000552	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035891	3001258	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035891	3001258	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	RuBisCo, C-terminal domain	8035888	3000552	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
P	UCR_14kD	e7jn4P1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.1)
N	UCR_14kD	e7jn4N1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.1)
L	UCR_14kD	e7jn4L1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.1)
J	UCR_14kD	e7jn4J1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.1)
H	UCR_14kD	e7jn4H1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.1)
F	UCR_14kD	e7jn4F1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.1)
D	UCR_14kD	e7jn4D1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.1)
B	UCR_14kD	e7jn4B1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.1)
O	UCR_14kD	e7jn4O1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.1)
M	UCR_14kD	e7jn4M1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.1)
K	UCR_14kD	e7jn4K1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.1)
I	UCR_14kD	e7jn4I1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.1)
G	UCR_14kD	e7jn4G1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.1)
E	UCR_14kD	e7jn4E1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.1)
C	UCR_14kD	e7jn4C1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.1)
A	UCR_14kD	e7jn4A1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_14kD	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C, E, G, I A, C, E, G, I, K, M, O	PF02788	Ribulose bisphosphate carboxylase large chain, N-terminal domain (RuBisCO_large_N)	Ribulose bisphosphate carboxylase large chain, N-terminal domain	The N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold.	Domain
A, C, E, G, I A, C, E, G, I, K, M, O	PF00016	Ribulose bisphosphate carboxylase large chain, catalytic domain (RuBisCO_large)	Ribulose bisphosphate carboxylase large chain, catalytic domain	The C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D, F, H, J B, D, F, H, J, L, N, P	Ribulose bisphosphate carboxylase small chain 2, chloroplastic	ribulose-bisphosphate carboxylase activity carboxy-lyase activity lyase activity catalytic activity carbon-carbon lyase activity	metabolic compound salvage biosynthetic process metabolic process cellular process photorespiration carbohydrate metabolic process photosynthesis reductive pentose-phosphate cycle carbohydrate biosynthetic process photosynthesis, dark reaction primary metabolic process carbon fixation	membrane-bounded organelle intracellular anatomical structure plastid intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure plastid stroma organelle chloroplast stroma cytoplasm chloroplast
A, C, E, G, I A, C, E, G, I, K, M, O	Ribulose bisphosphate carboxylase large chain	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding ribulose-bisphosphate carboxylase activity carboxy-lyase activity lyase activity catalytic activity carbon-carbon lyase activity monooxygenase activity oxidoreductase activity	metabolic compound salvage biosynthetic process metabolic process cellular process photorespiration carbohydrate metabolic process photosynthesis reductive pentose-phosphate cycle carbohydrate biosynthetic process photosynthesis, dark reaction primary metabolic process carbon fixation	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle chloroplast

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D, F, H, J B, D, F, H, J, L, N, P	IPR036385	Ribulose bisphosphate carboxylase, small subunit superfamily	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L, N, P	IPR024681	Ribulose bisphosphate carboxylase, small subunit	Family
B, D, F, H, J B, D, F, H, J, L, N, P	IPR000894	Ribulose bisphosphate carboxylase small subunit, domain	Domain
A, C, E, G, I A, C, E, G, I, K, M, O	IPR020888	Ribulose bisphosphate carboxylase large subunit, type I	Family
A, C, E, G, I A, C, E, G, I, K, M, O	IPR036376	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K, M, O	IPR020878	Ribulose bisphosphate carboxylase, large chain, active site	Active Site
A, C, E, G, I A, C, E, G, I, K, M, O	IPR000685	Ribulose bisphosphate carboxylase, large subunit, C-terminal	Domain
A, C, E, G, I A, C, E, G, I, K, M, O	IPR033966	RuBisCO	Family
A, C, E, G, I A, C, E, G, I, K, M, O	IPR017443	Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal	Domain
A, C, E, G, I A, C, E, G, I, K, M, O	IPR036422	RuBisCO large subunit, N-terminal domain superfamily	Homologous Superfamily

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, C, E, G, I A, C, E, G, I, K, M, O	SMC	Parent Component: CYS RESID: AA0234 PSI-MOD : S-methyl-L-cysteine MOD:00239