7FED | pdb_00007fed

Cryo-EM structure of the nonameric SsaV cytosolic domain with D9 symmetry

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth C]	I-set	e7fedC2	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: I-set	ECOD (develop294)
R	I-set	e7fedR2	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: I-set	ECOD (develop294)
Q	I-set	e7fedQ1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: I-set	ECOD (develop294)
P	I-set	e7fedP1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: I-set	ECOD (develop294)
O	I-set	e7fedO1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: I-set	ECOD (develop294)
N	I-set	e7fedN2	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: I-set	ECOD (develop294)
M	I-set	e7fedM1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: I-set	ECOD (develop294)
L	I-set	e7fedL1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: I-set	ECOD (develop294)
K	I-set	e7fedK1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: I-set	ECOD (develop294)
J	I-set	e7fedJ1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: I-set	ECOD (develop294)
I	I-set	e7fedI1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: I-set	ECOD (develop294)
H	I-set	e7fedH2	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: I-set	ECOD (develop294)
G	I-set	e7fedG1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: I-set	ECOD (develop294)
F	I-set	e7fedF1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: I-set	ECOD (develop294)
E [auth D]	I-set	e7fedD2	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: I-set	ECOD (develop294)
C [auth B]	I-set	e7fedB1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: I-set	ECOD (develop294)
B [auth A]	I-set	e7fedA1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: I-set	ECOD (develop294)
A [auth E]	I-set	e7fedE1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: I-set	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D [auth C]	3.40.30.60	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	FHIPEP family, domain 1	CATH (utative)
D [auth C]	1.10.8.540	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (utative)
D [auth C]	3.40.50.12790	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	FHIPEP family, domain 4	CATH (utative)
R	3.40.30.60	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	FHIPEP family, domain 1	CATH (utative)
R	1.10.8.540	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (utative)
R	3.40.50.12790	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	FHIPEP family, domain 4	CATH (utative)
Q	3.40.30.60	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	FHIPEP family, domain 1	CATH (utative)
Q	1.10.8.540	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (utative)
Q	3.40.50.12790	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	FHIPEP family, domain 4	CATH (utative)
P	3.40.30.60	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	FHIPEP family, domain 1	CATH (utative)
P	1.10.8.540	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (utative)
P	3.40.50.12790	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	FHIPEP family, domain 4	CATH (utative)
O	3.40.30.60	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	FHIPEP family, domain 1	CATH (utative)
O	1.10.8.540	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (utative)
O	3.40.50.12790	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	FHIPEP family, domain 4	CATH (utative)
N	3.40.30.60	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	FHIPEP family, domain 1	CATH (utative)
N	1.10.8.540	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (utative)
N	3.40.50.12790	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	FHIPEP family, domain 4	CATH (utative)
M	3.40.30.60	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	FHIPEP family, domain 1	CATH (utative)
M	1.10.8.540	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (utative)
M	3.40.50.12790	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	FHIPEP family, domain 4	CATH (utative)
L	3.40.30.60	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	FHIPEP family, domain 1	CATH (utative)
L	1.10.8.540	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (utative)
L	3.40.50.12790	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	FHIPEP family, domain 4	CATH (utative)
K	3.40.30.60	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	FHIPEP family, domain 1	CATH (utative)
K	1.10.8.540	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (utative)
K	3.40.50.12790	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	FHIPEP family, domain 4	CATH (utative)
J	3.40.30.60	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	FHIPEP family, domain 1	CATH (utative)
J	1.10.8.540	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (utative)
J	3.40.50.12790	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	FHIPEP family, domain 4	CATH (utative)
I	3.40.30.60	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	FHIPEP family, domain 1	CATH (utative)
I	1.10.8.540	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (utative)
I	3.40.50.12790	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	FHIPEP family, domain 4	CATH (utative)
H	3.40.30.60	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	FHIPEP family, domain 1	CATH (utative)
H	1.10.8.540	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (utative)
H	3.40.50.12790	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	FHIPEP family, domain 4	CATH (utative)
G	3.40.30.60	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	FHIPEP family, domain 1	CATH (utative)
G	1.10.8.540	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (utative)
G	3.40.50.12790	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	FHIPEP family, domain 4	CATH (utative)
F	3.40.30.60	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	FHIPEP family, domain 1	CATH (utative)
F	1.10.8.540	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (utative)
F	3.40.50.12790	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	FHIPEP family, domain 4	CATH (utative)
E [auth D]	3.40.30.60	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	FHIPEP family, domain 1	CATH (utative)
E [auth D]	1.10.8.540	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (utative)
E [auth D]	3.40.50.12790	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	FHIPEP family, domain 4	CATH (utative)
C [auth B]	3.40.30.60	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	FHIPEP family, domain 1	CATH (utative)
C [auth B]	1.10.8.540	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (utative)
C [auth B]	3.40.50.12790	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	FHIPEP family, domain 4	CATH (utative)
B [auth A]	3.40.30.60	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	FHIPEP family, domain 1	CATH (utative)
B [auth A]	1.10.8.540	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (utative)
B [auth A]	3.40.50.12790	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	FHIPEP family, domain 4	CATH (utative)
A [auth E]	3.40.30.60	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	FHIPEP family, domain 1	CATH (utative)
A [auth E]	1.10.8.540	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (utative)
A [auth E]	3.40.50.12790	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	FHIPEP family, domain 4	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth E], B [auth A], C [auth B], D [auth C], E [auth D], A [auth E], B [auth A], C [auth B], D [auth C], E [auth D], F, G, H, I, J, K, L, M, N, O, P, Q, R	PF00771	FHIPEP family (FHIPEP)	FHIPEP family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth E], B [auth A], C [auth B], D [auth C], E [auth D], A [auth E], B [auth A], C [auth B], D [auth C], E [auth D], F, G, H, I, J, K, L, M, N, O, P, Q, R	Secretion system apparatus protein SsaV	-	establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region localization secretion by cell protein transport macromolecule localization cellular process intracellular protein localization	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth E], B [auth A], C [auth B], D [auth C], E [auth D], A [auth E], B [auth A], C [auth B], D [auth C], E [auth D], F, G, H, I, J, K, L, M, N, O, P, Q, R	IPR042194	FHIPEP, domain 1	Homologous Superfamily
A [auth E], B [auth A], C [auth B], D [auth C], E [auth D], A [auth E], B [auth A], C [auth B], D [auth C], E [auth D], F, G, H, I, J, K, L, M, N, O, P, Q, R	IPR042196	FHIPEP, domain 4	Homologous Superfamily
A [auth E], B [auth A], C [auth B], D [auth C], E [auth D], A [auth E], B [auth A], C [auth B], D [auth C], E [auth D], F, G, H, I, J, K, L, M, N, O, P, Q, R	IPR001712	Type III secretion system FHIPEP	Family
A [auth E], B [auth A], C [auth B], D [auth C], E [auth D], A [auth E], B [auth A], C [auth B], D [auth C], E [auth D], F, G, H, I, J, K, L, M, N, O, P, Q, R	IPR042193	FHIPEP, domain 3	Homologous Superfamily
A [auth E], B [auth A], C [auth B], D [auth C], E [auth D], A [auth E], B [auth A], C [auth B], D [auth C], E [auth D], F, G, H, I, J, K, L, M, N, O, P, Q, R	IPR025505	FHIPEP conserved site	Conserved Site
A [auth E], B [auth A], C [auth B], D [auth C], E [auth D], A [auth E], B [auth A], C [auth B], D [auth C], E [auth D], F, G, H, I, J, K, L, M, N, O, P, Q, R	IPR006302	Type III secretion protein HrcV	Family

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A [auth E], B [auth A], C [auth B], D [auth C], E [auth D] A [auth E], B [auth A], C [auth B], D [auth C], E [auth D], F, G, H, I, J, K, L, M, N, O, P, Q, R	mpstruc	TRANSMEMBRANE PROTEINS: BETA-BARREL	Type III Secretion Systems	nonameric SsaV cytosolic domain in the context of the InvA-SsaV chimeric protein