Annotations: 7FD2

Cryo-EM structure of an alphavirus, Getah virus

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L [auth O]	Peptidase_S29	e7fd2O1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Peptidase_S29	ECOD (v295.2)
I [auth K]	Peptidase_S29	e7fd2K1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Peptidase_S29	ECOD (v295.2)
F [auth G]	Peptidase_S29	e7fd2G1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Peptidase_S29	ECOD (v295.2)
C	Peptidase_S29	e7fd2C1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Peptidase_S29	ECOD (v295.2)
K [auth N]	AAA_lid_RFC1	e7fd2N1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: AAA_lid_RFC1	ECOD (v295.2)
H [auth J]	AAA_lid_RFC1	e7fd2J1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: AAA_lid_RFC1	ECOD (v295.2)
E [auth F]	AAA_lid_RFC1	e7fd2F1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: AAA_lid_RFC1	ECOD (v295.2)
B	ORC3_N	e7fd2B01	A: alpha arrays	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: ORC3_N	ECOD (v295.2)
J [auth M]	Peptidase_S29	e7fd2M1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Peptidase_S29	ECOD (v295.2)
G [auth I]	Peptidase_S29	e7fd2I1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Peptidase_S29	ECOD (v295.2)
D [auth E]	Peptidase_S29	e7fd2E1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Peptidase_S29	ECOD (v295.2)
A	Peptidase_S29	e7fd2A1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Peptidase_S29	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
K [auth N]	2.60.40.3200	Mainly Beta	Sandwich	Immunoglobulin-like	Alphavirus E2 glycoprotein, A domain	CATH (utative)
H [auth J]	2.60.40.3200	Mainly Beta	Sandwich	Immunoglobulin-like	Alphavirus E2 glycoprotein, A domain	CATH (utative)
E [auth F]	2.60.40.3200	Mainly Beta	Sandwich	Immunoglobulin-like	Alphavirus E2 glycoprotein, A domain	CATH (utative)
B	2.60.40.3200	Mainly Beta	Sandwich	Immunoglobulin-like	Alphavirus E2 glycoprotein, A domain	CATH (utative)
J [auth M]	2.60.40.350	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (utative)
G [auth I]	2.60.40.350	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (utative)
D [auth E]	2.60.40.350	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (utative)
A	2.60.40.350	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, F [auth G], I [auth K], L [auth O]	capsid protein	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity RNA binding binding nucleic acid binding passive transmembrane transporter activity channel activity transporter activity peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity RNA binding binding nucleic acid binding passive transmembrane transporter activity channel activity transporter activity transmembrane transporter activity structural molecule activity	viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated suppression of host signal transduction pathway symbiont-mediated perturbation of host cellular process symbiont-mediated perturbation of host process symbiont-mediated suppression of host toll-like receptor signaling pathway symbiont-mediated perturbation of host signal transduction pathway viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated suppression of host signal transduction pathway symbiont-mediated perturbation of host cellular process symbiont-mediated perturbation of host process symbiont-mediated suppression of host toll-like receptor signaling pathway symbiont-mediated perturbation of host signal transduction pathway modulation of process of another organism transmembrane transport localization transport monoatomic ion transmembrane transport monoatomic ion transport cellular process establishment of localization proteolysis metabolic process primary metabolic process protein metabolic process macromolecule metabolic process virion attachment to host cell receptor-mediated virion attachment to host cell adhesion of symbiont to host cell entry receptor-mediated virion attachment to host cell adhesion of symbiont to host	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum other organism part host cell cytoplasm part host intracellular organelle cellular anatomical structure host cell cytoplasm host cell part host intracellular region host cell plasma membrane host cell membrane virion component host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum other organism part host cell cytoplasm part host intracellular organelle cellular anatomical structure host cell cytoplasm host cell part host intracellular region host cell plasma membrane host cell membrane virion component virion membrane viral capsid icosahedral viral capsid T=4 icosahedral viral capsid host cell Golgi apparatus host cell nucleus
B, E [auth F], H [auth J], K [auth N]	Envelope glycoprotein 2	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity RNA binding binding nucleic acid binding passive transmembrane transporter activity channel activity transporter activity peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity RNA binding binding nucleic acid binding passive transmembrane transporter activity channel activity transporter activity transmembrane transporter activity structural molecule activity	viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated suppression of host signal transduction pathway symbiont-mediated perturbation of host cellular process symbiont-mediated perturbation of host process symbiont-mediated suppression of host toll-like receptor signaling pathway symbiont-mediated perturbation of host signal transduction pathway viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated suppression of host signal transduction pathway symbiont-mediated perturbation of host cellular process symbiont-mediated perturbation of host process symbiont-mediated suppression of host toll-like receptor signaling pathway symbiont-mediated perturbation of host signal transduction pathway modulation of process of another organism transmembrane transport localization transport monoatomic ion transmembrane transport monoatomic ion transport cellular process establishment of localization proteolysis metabolic process primary metabolic process protein metabolic process macromolecule metabolic process virion attachment to host cell receptor-mediated virion attachment to host cell adhesion of symbiont to host cell entry receptor-mediated virion attachment to host cell adhesion of symbiont to host	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum other organism part host cell cytoplasm part host intracellular organelle cellular anatomical structure host cell cytoplasm host cell part host intracellular region host cell plasma membrane host cell membrane virion component host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum other organism part host cell cytoplasm part host intracellular organelle cellular anatomical structure host cell cytoplasm host cell part host intracellular region host cell plasma membrane host cell membrane virion component virion membrane viral capsid icosahedral viral capsid T=4 icosahedral viral capsid host cell Golgi apparatus host cell nucleus
A, D [auth E], G [auth I], J [auth M]	Envelope glycoprotein 1	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity RNA binding binding nucleic acid binding passive transmembrane transporter activity channel activity transporter activity peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity RNA binding binding nucleic acid binding passive transmembrane transporter activity channel activity transporter activity transmembrane transporter activity structural molecule activity	viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated suppression of host signal transduction pathway symbiont-mediated perturbation of host cellular process symbiont-mediated perturbation of host process symbiont-mediated suppression of host toll-like receptor signaling pathway symbiont-mediated perturbation of host signal transduction pathway viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated suppression of host signal transduction pathway symbiont-mediated perturbation of host cellular process symbiont-mediated perturbation of host process symbiont-mediated suppression of host toll-like receptor signaling pathway symbiont-mediated perturbation of host signal transduction pathway modulation of process of another organism transmembrane transport localization transport monoatomic ion transmembrane transport monoatomic ion transport cellular process establishment of localization proteolysis metabolic process primary metabolic process protein metabolic process macromolecule metabolic process virion attachment to host cell receptor-mediated virion attachment to host cell adhesion of symbiont to host cell entry receptor-mediated virion attachment to host cell adhesion of symbiont to host	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum other organism part host cell cytoplasm part host intracellular organelle cellular anatomical structure host cell cytoplasm host cell part host intracellular region host cell plasma membrane host cell membrane virion component host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum other organism part host cell cytoplasm part host intracellular organelle cellular anatomical structure host cell cytoplasm host cell part host intracellular region host cell plasma membrane host cell membrane virion component virion membrane viral capsid icosahedral viral capsid T=4 icosahedral viral capsid host cell Golgi apparatus host cell nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, F [auth G], I [auth K], L [auth O]	IPR002533	Alphavirus E3 spike glycoprotein	Domain
C, F [auth G], I [auth K], L [auth O]	IPR038055	Flaviviral glycoprotein E, dimerisation domain	Homologous Superfamily
C, F [auth G], I [auth K], L [auth O]	IPR014756	Immunoglobulin E-set	Homologous Superfamily
C, F [auth G], I [auth K], L [auth O]	IPR042304	Alphavirus E2 glycoprotein, domain A	Homologous Superfamily
C, F [auth G], I [auth K], L [auth O]	IPR036253	Flavivirus glycoprotein, central and dimerisation domain superfamily	Homologous Superfamily
C, F [auth G], I [auth K], L [auth O]	IPR009003	Peptidase S1, PA clan	Homologous Superfamily
C, F [auth G], I [auth K], L [auth O]	IPR042305	Alphavirus E2 glycoprotein, domain B	Homologous Superfamily
C, F [auth G], I [auth K], L [auth O]	IPR042306	Alphavirus E2 glycoprotein, domain C	Homologous Superfamily
C, F [auth G], I [auth K], L [auth O]	IPR000936	Alphavirus E2 glycoprotein	Family
C, F [auth G], I [auth K], L [auth O]	IPR000930	Peptidase S3, togavirin	Domain
C, F [auth G], I [auth K], L [auth O]	IPR002548	Alphavirus E1 glycoprotein	Domain
C, F [auth G], I [auth K], L [auth O]	IPR000336	Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamily	Homologous Superfamily
B, E [auth F], H [auth J], K [auth N]	IPR002533	Alphavirus E3 spike glycoprotein	Domain
B, E [auth F], H [auth J], K [auth N]	IPR038055	Flaviviral glycoprotein E, dimerisation domain	Homologous Superfamily
B, E [auth F], H [auth J], K [auth N]	IPR014756	Immunoglobulin E-set	Homologous Superfamily
B, E [auth F], H [auth J], K [auth N]	IPR042304	Alphavirus E2 glycoprotein, domain A	Homologous Superfamily
B, E [auth F], H [auth J], K [auth N]	IPR036253	Flavivirus glycoprotein, central and dimerisation domain superfamily	Homologous Superfamily
B, E [auth F], H [auth J], K [auth N]	IPR009003	Peptidase S1, PA clan	Homologous Superfamily
B, E [auth F], H [auth J], K [auth N]	IPR042305	Alphavirus E2 glycoprotein, domain B	Homologous Superfamily
B, E [auth F], H [auth J], K [auth N]	IPR042306	Alphavirus E2 glycoprotein, domain C	Homologous Superfamily
B, E [auth F], H [auth J], K [auth N]	IPR000936	Alphavirus E2 glycoprotein	Family
B, E [auth F], H [auth J], K [auth N]	IPR000930	Peptidase S3, togavirin	Domain
B, E [auth F], H [auth J], K [auth N]	IPR002548	Alphavirus E1 glycoprotein	Domain
B, E [auth F], H [auth J], K [auth N]	IPR000336	Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamily	Homologous Superfamily
A, D [auth E], G [auth I], J [auth M]	IPR002533	Alphavirus E3 spike glycoprotein	Domain
A, D [auth E], G [auth I], J [auth M]	IPR038055	Flaviviral glycoprotein E, dimerisation domain	Homologous Superfamily
A, D [auth E], G [auth I], J [auth M]	IPR014756	Immunoglobulin E-set	Homologous Superfamily
A, D [auth E], G [auth I], J [auth M]	IPR042304	Alphavirus E2 glycoprotein, domain A	Homologous Superfamily
A, D [auth E], G [auth I], J [auth M]	IPR036253	Flavivirus glycoprotein, central and dimerisation domain superfamily	Homologous Superfamily
A, D [auth E], G [auth I], J [auth M]	IPR009003	Peptidase S1, PA clan	Homologous Superfamily
A, D [auth E], G [auth I], J [auth M]	IPR042305	Alphavirus E2 glycoprotein, domain B	Homologous Superfamily
A, D [auth E], G [auth I], J [auth M]	IPR042306	Alphavirus E2 glycoprotein, domain C	Homologous Superfamily
A, D [auth E], G [auth I], J [auth M]	IPR000936	Alphavirus E2 glycoprotein	Family
A, D [auth E], G [auth I], J [auth M]	IPR000930	Peptidase S3, togavirin	Domain
A, D [auth E], G [auth I], J [auth M]	IPR002548	Alphavirus E1 glycoprotein	Domain
A, D [auth E], G [auth I], J [auth M]	IPR000336	Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamily	Homologous Superfamily