7F67 | pdb_00007f67

eIF2B-SFSV NSs-2-eIF2


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
P [auth Q]SCOP2B SuperfamilyNucleic acid-binding proteins 8042151 3000135 SCOP2B (2022-06-29)
P [auth Q]SCOP2B SuperfamilyeIF2alpha middle domain-like 8042150 3001761 SCOP2B (2022-06-29)
M [auth N]SCOP2B SuperfamilyeIF2alpha middle domain-like 8042150 3001761 SCOP2B (2022-06-29)
M [auth N]SCOP2B SuperfamilyNucleic acid-binding proteins 8042151 3000135 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyNagB/RpiA/CoA transferase-like 8101599 3000693 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyNagB/RpiA/CoA transferase-like 8101599 3000693 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
IHexapep_2_1e7f67I3 A: beta duplicates or obligate multimersX: Single-stranded left-handed beta-helixH: Trimeric LpxA-like enzymes (From Topology)T: Trimeric LpxA-like enzymesF: Hexapep_2_1ECOD (1.6)
IW2e7f67I1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: W2ECOD (1.6)
INTP_transferasee7f67I2 A: a/b three-layered sandwichesX: Nucleotide-diphospho-sugar transferases (From Topology)H: Nucleotide-diphospho-sugar transferases (From Topology)T: Nucleotide-diphospho-sugar transferasesF: NTP_transferaseECOD (1.6)
JHexapep_2_1e7f67J3 A: beta duplicates or obligate multimersX: Single-stranded left-handed beta-helixH: Trimeric LpxA-like enzymes (From Topology)T: Trimeric LpxA-like enzymesF: Hexapep_2_1ECOD (1.6)
JW2e7f67J1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: W2ECOD (1.6)
JNTP_transferasee7f67J2 A: a/b three-layered sandwichesX: Nucleotide-diphospho-sugar transferases (From Topology)H: Nucleotide-diphospho-sugar transferases (From Topology)T: Nucleotide-diphospho-sugar transferasesF: NTP_transferaseECOD (1.6)
R [auth T]GTP_EFTU_D2_2e7f67T2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: GTP_EFTU_D2_2ECOD (1.6)
R [auth T]eIF2_Ce7f67T3 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Aminomethyltransferase beta-barrel domainF: eIF2_CECOD (1.6)
R [auth T]MnmE_helical_2nde7f67T1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: MnmE_helical_2ndECOD (1.6)
O [auth S]GTP_EFTU_D2_2e7f67S2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: GTP_EFTU_D2_2ECOD (1.6)
O [auth S]eIF2_Ce7f67S3 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Aminomethyltransferase beta-barrel domainF: eIF2_CECOD (1.6)
O [auth S]MnmE_helical_2nde7f67S1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: MnmE_helical_2ndECOD (1.6)
P [auth Q]S1_1e7f67Q3 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: S1_1ECOD (1.6)
P [auth Q]EIF_2_alpha_Ne7f67Q2 A: alpha arraysX: HhH/H2THH: eIF2alpha middle domain (From Topology)T: eIF2alpha middle domainF: EIF_2_alpha_NECOD (1.6)
P [auth Q]EIF_2_alpha_Ce7f67Q1 A: a+b two layersX: Alpha-beta plaitsH: eIF-2-alpha, C-terminal domain (From Topology)T: eIF-2-alpha, C-terminal domainF: EIF_2_alpha_CECOD (1.6)
M [auth N]S1_1e7f67N3 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: S1_1ECOD (1.6)
M [auth N]EIF_2_alpha_Ne7f67N2 A: alpha arraysX: HhH/H2THH: eIF2alpha middle domain (From Topology)T: eIF2alpha middle domainF: EIF_2_alpha_NECOD (1.6)
M [auth N]EIF_2_alpha_Ce7f67N1 A: a+b two layersX: Alpha-beta plaitsH: eIF-2-alpha, C-terminal domain (From Topology)T: eIF-2-alpha, C-terminal domainF: EIF_2_alpha_CECOD (1.6)
HIF-2B_N_1e7f67H2 A: alpha bundlesX: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)H: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)T: Translation initiation factor eIF-2B delta subunit N-terminal helical domainF: IF-2B_N_1ECOD (1.6)
HIF-2B_Ce7f67H1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NagB/RpiA/CoA transferase-likeF: IF-2B_CECOD (1.6)
GIF-2B_N_1e7f67G1 A: alpha bundlesX: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)H: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)T: Translation initiation factor eIF-2B delta subunit N-terminal helical domainF: IF-2B_N_1ECOD (1.6)
GIF-2B_Ce7f67G2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NagB/RpiA/CoA transferase-likeF: IF-2B_CECOD (1.6)
FNTP_transferasee7f67F1 A: a/b three-layered sandwichesX: Nucleotide-diphospho-sugar transferases (From Topology)H: Nucleotide-diphospho-sugar transferases (From Topology)T: Nucleotide-diphospho-sugar transferasesF: NTP_transferaseECOD (1.6)
ENTP_transferasee7f67E1 A: a/b three-layered sandwichesX: Nucleotide-diphospho-sugar transferases (From Topology)H: Nucleotide-diphospho-sugar transferases (From Topology)T: Nucleotide-diphospho-sugar transferasesF: NTP_transferaseECOD (1.6)
DKOG1465e7f67D2 A: alpha bundlesX: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)H: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)T: Translation initiation factor eIF-2B delta subunit N-terminal helical domainF: KOG1465ECOD (1.6)
DIF-2B_Ce7f67D1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NagB/RpiA/CoA transferase-likeF: IF-2B_CECOD (1.6)
CKOG1465e7f67C2 A: alpha bundlesX: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)H: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)T: Translation initiation factor eIF-2B delta subunit N-terminal helical domainF: KOG1465ECOD (1.6)
CIF-2B_Ce7f67C1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NagB/RpiA/CoA transferase-likeF: IF-2B_CECOD (1.6)
BIF-2B_N_1e7f67B2 A: alpha bundlesX: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)H: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)T: Translation initiation factor eIF-2B delta subunit N-terminal helical domainF: IF-2B_N_1ECOD (1.6)
BIF-2B_Ce7f67B1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NagB/RpiA/CoA transferase-likeF: IF-2B_CECOD (1.6)
AIF-2B_N_1e7f67A2 A: alpha bundlesX: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)H: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)T: Translation initiation factor eIF-2B delta subunit N-terminal helical domainF: IF-2B_N_1ECOD (1.6)
AIF-2B_Ce7f67A1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NagB/RpiA/CoA transferase-likeF: IF-2B_CECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
I3.90.550.10 Alpha Beta Alpha-Beta Complex Spore Coat Polysaccharide Biosynthesis Protein SpsA Chain ACATH (utative)
J3.90.550.10 Alpha Beta Alpha-Beta Complex Spore Coat Polysaccharide Biosynthesis Protein SpsA Chain ACATH (utative)
P [auth Q]2.40.50.140 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteinsCATH (utative)
P [auth Q]1.10.150.190 Mainly Alpha Orthogonal Bundle DNA polymerase domain 1CATH (utative)
P [auth Q]3.30.70.1130 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits EIF_2_alphaCATH (utative)
M [auth N]2.40.50.140 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteinsCATH (utative)
M [auth N]1.10.150.190 Mainly Alpha Orthogonal Bundle DNA polymerase domain 1CATH (utative)
M [auth N]3.30.70.1130 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits EIF_2_alphaCATH (utative)
F3.90.550.10 Alpha Beta Alpha-Beta Complex Spore Coat Polysaccharide Biosynthesis Protein SpsA Chain ACATH (utative)
E3.90.550.10 Alpha Beta Alpha-Beta Complex Spore Coat Polysaccharide Biosynthesis Protein SpsA Chain ACATH (utative)
D3.40.50.10470 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Translation initiation factor eif-2bCATH (utative)
C3.40.50.10470 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Translation initiation factor eif-2bCATH (utative)
B1.20.120.1070 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A) Translation initiation factor eIF-2B, N-terminal domainCATH (utative)
B3.40.50.10470 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Translation initiation factor eif-2bCATH (utative)
A1.20.120.1070 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A) Translation initiation factor eIF-2B, N-terminal domainCATH (utative)
A3.40.50.10470 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Translation initiation factor eif-2bCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
I, J
PF02020eIF4-gamma/eIF5/eIF2-epsilon (W2)eIF4-gamma/eIF5/eIF2-epsilon- Repeat
O [auth S],
R [auth T]
PF00009Elongation factor Tu GTP binding domain (GTP_EFTU)Elongation factor Tu GTP binding domainThis domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Domain
O [auth S],
R [auth T]
PF09173Initiation factor eIF2 gamma, C terminal (eIF2_C)Initiation factor eIF2 gamma, C terminalMembers of this family, which are found in the initiation factors eIF2 and EF-Tu, adopt a structure consisting of a beta barrel with Greek key topology. They are required for formation of the ternary complex with GTP and initiator tRNA [1]. Domain
O [auth S],
R [auth T]
PF03144Elongation factor Tu domain 2 (GTP_EFTU_D2)Elongation factor Tu domain 2Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as e ...Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to Pfam:PF03143, and in fact has weak sequence matches to this domain.
Domain
M [auth N],
P [auth Q]
PF07541Eukaryotic translation initiation factor 2 alpha subunit (EIF_2_alpha)Eukaryotic translation initiation factor 2 alpha subunit- Family
M [auth N],
P [auth Q]
PF00575S1 RNA binding domain (S1)S1 RNA binding domainThe S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure. Domain
K, L
PF11073Rift valley fever virus non structural protein (NSs) like (NSs)Rift valley fever virus non structural protein (NSs) like- Family
G, H
PF01008Initiation factor 2 subunit family (IF-2B)Initiation factor 2 subunit family- Family
E, F
PF00483Nucleotidyl transferase (NTP_transferase)Nucleotidyl transferase- Family
C, D
PF01008Initiation factor 2 subunit family (IF-2B)Initiation factor 2 subunit family- Family
A, B
PF01008Initiation factor 2 subunit family (IF-2B)Initiation factor 2 subunit family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I, J
Translation initiation factor eIF-2B subunit epsilon
O [auth S],
R [auth T]
Eukaryotic translation initiation factor 2 subunit 3
N [auth O],
Q [auth R]
eIF2beta---
M [auth N],
P [auth Q]
Eukaryotic translation initiation factor 2 subunit 1
K, L
Non-structural protein NS-S- - -
G, H
Translation initiation factor eIF-2B subunit delta
E, F
Translation initiation factor eIF-2B subunit gamma
C, D
Translation initiation factor eIF-2B subunit beta
A, B
Translation initiation factor eIF-2B subunit alpha

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I, J
IPR044123Translation initiation factor eIF-2B subunit epsilon, W2 domainDomain
I, J
IPR016024Armadillo-type foldHomologous Superfamily
I, J
IPR003307W2 domainDomain
I, J
IPR035543Translation initiation factor eIF-2B subunit epsilon, N-terminalDomain
I, J
IPR011004Trimeric LpxA-like superfamilyHomologous Superfamily
I, J
IPR029044Nucleotide-diphospho-sugar transferasesHomologous Superfamily
I, J
IPR051956eIF2B Complex Subunit EpsilonFamily
O [auth S],
R [auth T]
IPR000795Translational (tr)-type GTP-binding domainDomain
O [auth S],
R [auth T]
IPR009001Translation elongation factor EF1A/initiation factor IF2gamma, C-terminalHomologous Superfamily
O [auth S],
R [auth T]
IPR004161Translation elongation factor EFTu-like, domain 2Domain
O [auth S],
R [auth T]
IPR050543Eukaryotic Initiation Factor 2 Gamma SubunitFamily
O [auth S],
R [auth T]
IPR044128Initiation factor eIF2 gamma, GTP-binding domainDomain
O [auth S],
R [auth T]
IPR015256Initiation factor eIF2 gamma, C-terminalDomain
O [auth S],
R [auth T]
IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
O [auth S],
R [auth T]
IPR044127Initiation factor eIF2 gamma, domain 2Domain
O [auth S],
R [auth T]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
M [auth N],
P [auth Q]
IPR044126IF2a, S1-like domainDomain
M [auth N],
P [auth Q]
IPR024054Translation initiation factor 2, alpha subunit, middle domain superfamilyHomologous Superfamily
M [auth N],
P [auth Q]
IPR024055Translation initiation factor 2, alpha subunit, C-terminalHomologous Superfamily
M [auth N],
P [auth Q]
IPR003029S1 domainDomain
M [auth N],
P [auth Q]
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
M [auth N],
P [auth Q]
IPR011488Translation initiation factor 2, alpha subunitFamily
K, L
IPR039434Rift valley fever virus non structural protein-likeFamily
K, L
IPR024376Phlebovirus, non structural proteinFamily
G, H
IPR000649Initiation factor 2B-relatedFamily
G, H
IPR042529Initiation factor 2B-like, C-terminalHomologous Superfamily
G, H
IPR037171NagB/RpiA transferase-likeHomologous Superfamily
E, F
IPR051960Eukaryotic Initiation Factor 2B Subunit GammaFamily
E, F
IPR005835Nucleotidyl transferase domainDomain
E, F
IPR029044Nucleotide-diphospho-sugar transferasesHomologous Superfamily
C, D
IPR051855Eukaryotic initiation factor 2B subunit betaFamily
C, D
IPR000649Initiation factor 2B-relatedFamily
C, D
IPR042529Initiation factor 2B-like, C-terminalHomologous Superfamily
C, D
IPR037171NagB/RpiA transferase-likeHomologous Superfamily
A, B
IPR000649Initiation factor 2B-relatedFamily
A, B
IPR051501Eukaryotic initiation factor 2B subunits alpha/beta/deltaFamily
A, B
IPR042529Initiation factor 2B-like, C-terminalHomologous Superfamily
A, B
IPR037171NagB/RpiA transferase-likeHomologous Superfamily
A, B
IPR042528Translation initiation factor eIF-2B subunit alpha, N-terminalHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
I, J
PharosQ13144
O [auth S],
R [auth T]
PharosP41091
M [auth N],
P [auth Q]
PharosP05198
G, H
PharosQ9UI10
E, F
PharosQ9NR50
C, D
PharosP49770
A, B
PharosQ14232