7F4V

Cryo-EM structure of a primordial cyanobacterial photosystem I


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth aA]SCOP2 FamilyPhotosystem I subunits PsaA/PsaB8107297 4002118 SCOP2 (2022-06-29)
A [auth aA]SCOP2 SuperfamilyPhotosystem I subunits PsaA/PsaB8107298 3000850 SCOP2 (2022-06-29)
K [auth bA]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB8107298 3000850 SCOP2B (2022-06-29)
U [auth cA]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB8107298 3000850 SCOP2B (2022-06-29)
B [auth aB]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB8107296 3000850 SCOP2B (2022-06-29)
L [auth bB]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB8107296 3000850 SCOP2B (2022-06-29)
V [auth cB]SCOP2 FamilyPhotosystem I subunits PsaA/PsaB8107295 4002118 SCOP2 (2022-06-29)
V [auth cB]SCOP2 SuperfamilyPhotosystem I subunits PsaA/PsaB8107296 3000850 SCOP2 (2022-06-29)
C [auth aC]SCOP2B Superfamily4Fe-4S ferredoxins8107302 3000020 SCOP2B (2022-06-29)
M [auth bC]SCOP2 Family7-Fe ferredoxin8107301 4001227 SCOP2 (2022-06-29)
M [auth bC]SCOP2 Superfamily4Fe-4S ferredoxins8107302 3000020 SCOP2 (2022-06-29)
W [auth cC]SCOP2B Superfamily4Fe-4S ferredoxins8107302 3000020 SCOP2B (2022-06-29)
D [auth aD]SCOP2 FamilyPhotosystem I subunit PsaD8107293 4003498 SCOP2 (2022-06-29)
D [auth aD]SCOP2 SuperfamilyPhotosystem I subunit PsaD8107294 3000951 SCOP2 (2022-06-29)
N [auth bD]SCOP2B SuperfamilyPhotosystem I subunit PsaD8107294 3000951 SCOP2B (2022-06-29)
X [auth cD]SCOP2B SuperfamilyPhotosystem I subunit PsaD8107294 3000951 SCOP2B (2022-06-29)
E [auth aE]SCOP2 FamilyPhotosystem I accessory protein E (PsaE)8107299 4001749 SCOP2 (2022-06-29)
E [auth aE]SCOP2 SuperfamilyElectron transport accessory proteins8107300 3000325 SCOP2 (2022-06-29)
O [auth bE]SCOP2B SuperfamilyElectron transport accessory proteins8107300 3000325 SCOP2B (2022-06-29)
Y [auth cE]SCOP2B SuperfamilyElectron transport accessory proteins8107300 3000325 SCOP2B (2022-06-29)
F [auth aF]SCOP2B SuperfamilySubunit III of photosystem I reaction centre PsaF8107304 3000813 SCOP2B (2022-06-29)
P [auth bF]SCOP2B SuperfamilySubunit III of photosystem I reaction centre PsaF8107304 3000813 SCOP2B (2022-06-29)
Z [auth cF]SCOP2 FamilySubunit III of photosystem I reaction centre PsaF8107303 4002091 SCOP2 (2022-06-29)
Z [auth cF]SCOP2 SuperfamilySubunit III of photosystem I reaction centre PsaF8107304 3000813 SCOP2 (2022-06-29)
CA [auth cL]SCOP2B SuperfamilyPhotosystem I reaction center subunit XI PsaL8107306 3000870 SCOP2B (2022-06-29)
I [auth aL]SCOP2 FamilyPhotosystem I reaction center subunit XI PsaL8107305 4002135 SCOP2 (2022-06-29)
I [auth aL]SCOP2 SuperfamilyPhotosystem I reaction center subunit XI PsaL8107306 3000870 SCOP2 (2022-06-29)
S [auth bL]SCOP2B SuperfamilyPhotosystem I reaction center subunit XI PsaL8107306 3000870 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth aA]PF00223e7f4vaA1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00223ECOD (1.6)
A [auth aA]PF00223e7f4vaA2 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PF00223ECOD (1.6)
K [auth bA]PF00223e7f4vbA1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00223ECOD (1.6)
K [auth bA]PF00223e7f4vbA2 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PF00223ECOD (1.6)
U [auth cA]PF00223e7f4vcA1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00223ECOD (1.6)
U [auth cA]PF00223e7f4vcA2 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PF00223ECOD (1.6)
DA [auth cM]PF07465e7f4vcM1 A: extended segmentsX: Subunit XII of photosystem I reaction centre, PsaM (From Topology)H: Subunit XII of photosystem I reaction centre, PsaM (From Topology)T: Subunit XII of photosystem I reaction centre, PsaMF: PF07465ECOD (1.6)
J [auth aM]PF07465e7f4vaM1 A: extended segmentsX: Subunit XII of photosystem I reaction centre, PsaM (From Topology)H: Subunit XII of photosystem I reaction centre, PsaM (From Topology)T: Subunit XII of photosystem I reaction centre, PsaMF: PF07465ECOD (1.6)
T [auth bM]PF07465e7f4vbM1 A: extended segmentsX: Subunit XII of photosystem I reaction centre, PsaM (From Topology)H: Subunit XII of photosystem I reaction centre, PsaM (From Topology)T: Subunit XII of photosystem I reaction centre, PsaMF: PF07465ECOD (1.6)
B [auth aB]PF00223e7f4vaB1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00223ECOD (1.6)
B [auth aB]PF00223e7f4vaB2 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PF00223ECOD (1.6)
L [auth bB]PF00223e7f4vbB1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00223ECOD (1.6)
L [auth bB]PF00223e7f4vbB2 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PF00223ECOD (1.6)
V [auth cB]PF00223e7f4vcB1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00223ECOD (1.6)
V [auth cB]PF00223e7f4vcB2 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PF00223ECOD (1.6)
C [auth aC]PF00037e7f4vaC1 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: PF00037ECOD (1.6)
M [auth bC]PF00037e7f4vbC1 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: PF00037ECOD (1.6)
W [auth cC]PF00037e7f4vcC1 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: PF00037ECOD (1.6)
D [auth aD]PF02531e7f4vaD1 A: a+b two layersX: Photosystem I subunit PsaD (From Topology)H: Photosystem I subunit PsaD (From Topology)T: Photosystem I subunit PsaDF: PF02531ECOD (1.6)
N [auth bD]PF02531e7f4vbD1 A: a+b two layersX: Photosystem I subunit PsaD (From Topology)H: Photosystem I subunit PsaD (From Topology)T: Photosystem I subunit PsaDF: PF02531ECOD (1.6)
X [auth cD]PF02531e7f4vcD1 A: a+b two layersX: Photosystem I subunit PsaD (From Topology)H: Photosystem I subunit PsaD (From Topology)T: Photosystem I subunit PsaDF: PF02531ECOD (1.6)
E [auth aE]PF02427e7f4vaE1 A: beta barrelsX: SH3H: SH3T: SH3F: PF02427ECOD (1.6)
O [auth bE]PF02427e7f4vbE1 A: beta barrelsX: SH3H: SH3T: SH3F: PF02427ECOD (1.6)
Y [auth cE]PF02427e7f4vcE1 A: beta barrelsX: SH3H: SH3T: SH3F: PF02427ECOD (1.6)
F [auth aF]PF02507e7f4vaF1 A: extended segmentsX: Subunit III of photosystem I reaction centre, PsaF (From Topology)H: Subunit III of photosystem I reaction centre, PsaF (From Topology)T: Subunit III of photosystem I reaction centre, PsaFF: PF02507ECOD (1.6)
P [auth bF]PF02507e7f4vbF1 A: extended segmentsX: Subunit III of photosystem I reaction centre, PsaF (From Topology)H: Subunit III of photosystem I reaction centre, PsaF (From Topology)T: Subunit III of photosystem I reaction centre, PsaFF: PF02507ECOD (1.6)
Z [auth cF]PF02507e7f4vcF1 A: extended segmentsX: Subunit III of photosystem I reaction centre, PsaF (From Topology)H: Subunit III of photosystem I reaction centre, PsaF (From Topology)T: Subunit III of photosystem I reaction centre, PsaFF: PF02507ECOD (1.6)
AA [auth cI]F_UNCLASSIFIEDe7f4vcI1 A: extended segmentsX: Subunit VIII of photosystem I reaction centre, PsaI (From Topology)H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology)T: Subunit VIII of photosystem I reaction centre, PsaIF: F_UNCLASSIFIEDECOD (1.6)
G [auth aI]F_UNCLASSIFIEDe7f4vaI1 A: extended segmentsX: Subunit VIII of photosystem I reaction centre, PsaI (From Topology)H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology)T: Subunit VIII of photosystem I reaction centre, PsaIF: F_UNCLASSIFIEDECOD (1.6)
Q [auth bI]F_UNCLASSIFIEDe7f4vbI1 A: extended segmentsX: Subunit VIII of photosystem I reaction centre, PsaI (From Topology)H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology)T: Subunit VIII of photosystem I reaction centre, PsaIF: F_UNCLASSIFIEDECOD (1.6)
CA [auth cL]PF02605e7f4vcL1 A: alpha bundlesX: Photosystem I reaction center subunit XI, PsaL (From Topology)H: Photosystem I reaction center subunit XI, PsaL (From Topology)T: Photosystem I reaction center subunit XI, PsaLF: PF02605ECOD (1.6)
I [auth aL]PF02605e7f4vaL1 A: alpha bundlesX: Photosystem I reaction center subunit XI, PsaL (From Topology)H: Photosystem I reaction center subunit XI, PsaL (From Topology)T: Photosystem I reaction center subunit XI, PsaLF: PF02605ECOD (1.6)
S [auth bL]PF02605e7f4vbL1 A: alpha bundlesX: Photosystem I reaction center subunit XI, PsaL (From Topology)H: Photosystem I reaction center subunit XI, PsaL (From Topology)T: Photosystem I reaction center subunit XI, PsaLF: PF02605ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth aA],
K [auth bA],
U [auth cA]
PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family
DA [auth cM],
J [auth aM],
T [auth bM]
PF07465Photosystem I protein M (PsaM) (PsaM)Photosystem I protein M (PsaM)- Family
B [auth aB],
L [auth bB],
V [auth cB]
PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family
C [auth aC],
M [auth bC],
W [auth cC]
PF128384Fe-4S dicluster domain (Fer4_7)4Fe-4S dicluster domainSuperfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ...Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.
Domain
D [auth aD],
N [auth bD],
X [auth cD]
PF02531PsaD (PsaD)PsaD- Family
E [auth aE],
O [auth bE],
Y [auth cE]
PF02427Photosystem I reaction centre subunit IV / PsaE (PSI_PsaE)Photosystem I reaction centre subunit IV / PsaEPsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane [1]. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains [1].Domain
F [auth aF],
P [auth bF],
Z [auth cF]
PF02507Photosystem I reaction centre subunit III (PSI_PsaF)Photosystem I reaction centre subunit III- Family
CA [auth cL],
I [auth aL],
S [auth bL]
PF02605Photosystem I reaction centre subunit XI (PsaL)Photosystem I reaction centre subunit XI- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth aA],
K [auth bA],
U [auth cA]
Photosystem I P700 chlorophyll a apoprotein A1
DA [auth cM],
J [auth aM],
T [auth bM]
Photosystem I reaction center subunit XII-
B [auth aB],
L [auth bB],
V [auth cB]
Photosystem I P700 chlorophyll a apoprotein A2
C [auth aC],
M [auth bC],
W [auth cC]
Photosystem I iron-sulfur center
D [auth aD],
N [auth bD],
X [auth cD]
Photosystem I reaction center subunit II-
E [auth aE],
O [auth bE],
Y [auth cE]
Photosystem I reaction center subunit IV-
F [auth aF],
P [auth bF],
Z [auth cF]
Photosystem I reaction center subunit III-
AA [auth cI],
G [auth aI],
Q [auth bI]
Photosystem I reaction center subunit Z-
BA [auth cJ],
H [auth aJ],
R [auth bJ]
Unknown protein---
CA [auth cL],
I [auth aL],
S [auth bL]
Photosystem I reaction center subunit XI-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth aA],
K [auth bA],
U [auth cA]
IPR006243Photosystem I PsaAFamily
A [auth aA],
K [auth bA],
U [auth cA]
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
A [auth aA],
K [auth bA],
U [auth cA]
IPR001280Photosystem I PsaA/PsaBFamily
A [auth aA],
K [auth bA],
U [auth cA]
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
DA [auth cM],
J [auth aM],
T [auth bM]
IPR010010Photosystem I PsaM, reaction centreFamily
B [auth aB],
L [auth bB],
V [auth cB]
IPR006664Outer membrane protein, bacterialDomain
B [auth aB],
L [auth bB],
V [auth cB]
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
B [auth aB],
L [auth bB],
V [auth cB]
IPR001280Photosystem I PsaA/PsaBFamily
B [auth aB],
L [auth bB],
V [auth cB]
IPR036737OmpA-like domain superfamilyHomologous Superfamily
B [auth aB],
L [auth bB],
V [auth cB]
IPR006665OmpA-like domainDomain
B [auth aB],
L [auth bB],
V [auth cB]
IPR006244Photosystem I PsaBFamily
B [auth aB],
L [auth bB],
V [auth cB]
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
C [auth aC],
M [auth bC],
W [auth cC]
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
C [auth aC],
M [auth bC],
W [auth cC]
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
C [auth aC],
M [auth bC],
W [auth cC]
IPR017491Photosystem I protein PsaCFamily
D [auth aD],
N [auth bD],
X [auth cD]
IPR003685Photosystem I PsaDFamily
D [auth aD],
N [auth bD],
X [auth cD]
IPR036579Photosystem I, reaction centre subunit PsaD superfamilyHomologous Superfamily
E [auth aE],
O [auth bE],
Y [auth cE]
IPR008990Electron transport accessory-like domain superfamilyHomologous Superfamily
E [auth aE],
O [auth bE],
Y [auth cE]
IPR003375Photosystem I PsaE, reaction centre subunit IVFamily
F [auth aF],
P [auth bF],
Z [auth cF]
IPR036577Photosystem I PsaF, reaction centre subunit III superfamilyHomologous Superfamily
F [auth aF],
P [auth bF],
Z [auth cF]
IPR003666Photosystem I PsaF, reaction centre subunit IIIFamily
CA [auth cL],
I [auth aL],
S [auth bL]
IPR003757Photosystem I PsaL, reaction centre subunit XIDomain
CA [auth cL],
I [auth aL],
S [auth bL]
IPR022980Photosystem I, reaction centre subunit XIFamily
CA [auth cL],
I [auth aL],
S [auth bL]
IPR036592Photosystem I PsaL, reaction centre subunit XI superfamilyHomologous Superfamily