7F4V
Cryo-EM structure of a primordial cyanobacterial photosystem I
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth aA] | SCOP2 Family | Photosystem I subunits PsaA/PsaB | 8107297 | 4002118 | SCOP2 (2022-06-29) |
A [auth aA] | SCOP2 Superfamily | Photosystem I subunits PsaA/PsaB | 8107298 | 3000850 | SCOP2 (2022-06-29) |
K [auth bA] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8107298 | 3000850 | SCOP2B (2022-06-29) |
U [auth cA] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8107298 | 3000850 | SCOP2B (2022-06-29) |
B [auth aB] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8107296 | 3000850 | SCOP2B (2022-06-29) |
L [auth bB] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8107296 | 3000850 | SCOP2B (2022-06-29) |
V [auth cB] | SCOP2 Family | Photosystem I subunits PsaA/PsaB | 8107295 | 4002118 | SCOP2 (2022-06-29) |
V [auth cB] | SCOP2 Superfamily | Photosystem I subunits PsaA/PsaB | 8107296 | 3000850 | SCOP2 (2022-06-29) |
C [auth aC] | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8107302 | 3000020 | SCOP2B (2022-06-29) |
M [auth bC] | SCOP2 Family | 7-Fe ferredoxin | 8107301 | 4001227 | SCOP2 (2022-06-29) |
M [auth bC] | SCOP2 Superfamily | 4Fe-4S ferredoxins | 8107302 | 3000020 | SCOP2 (2022-06-29) |
W [auth cC] | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8107302 | 3000020 | SCOP2B (2022-06-29) |
D [auth aD] | SCOP2 Family | Photosystem I subunit PsaD | 8107293 | 4003498 | SCOP2 (2022-06-29) |
D [auth aD] | SCOP2 Superfamily | Photosystem I subunit PsaD | 8107294 | 3000951 | SCOP2 (2022-06-29) |
N [auth bD] | SCOP2B Superfamily | Photosystem I subunit PsaD | 8107294 | 3000951 | SCOP2B (2022-06-29) |
X [auth cD] | SCOP2B Superfamily | Photosystem I subunit PsaD | 8107294 | 3000951 | SCOP2B (2022-06-29) |
E [auth aE] | SCOP2 Family | Photosystem I accessory protein E (PsaE) | 8107299 | 4001749 | SCOP2 (2022-06-29) |
E [auth aE] | SCOP2 Superfamily | Electron transport accessory proteins | 8107300 | 3000325 | SCOP2 (2022-06-29) |
O [auth bE] | SCOP2B Superfamily | Electron transport accessory proteins | 8107300 | 3000325 | SCOP2B (2022-06-29) |
Y [auth cE] | SCOP2B Superfamily | Electron transport accessory proteins | 8107300 | 3000325 | SCOP2B (2022-06-29) |
F [auth aF] | SCOP2B Superfamily | Subunit III of photosystem I reaction centre PsaF | 8107304 | 3000813 | SCOP2B (2022-06-29) |
P [auth bF] | SCOP2B Superfamily | Subunit III of photosystem I reaction centre PsaF | 8107304 | 3000813 | SCOP2B (2022-06-29) |
Z [auth cF] | SCOP2 Family | Subunit III of photosystem I reaction centre PsaF | 8107303 | 4002091 | SCOP2 (2022-06-29) |
Z [auth cF] | SCOP2 Superfamily | Subunit III of photosystem I reaction centre PsaF | 8107304 | 3000813 | SCOP2 (2022-06-29) |
CA [auth cL] | SCOP2B Superfamily | Photosystem I reaction center subunit XI PsaL | 8107306 | 3000870 | SCOP2B (2022-06-29) |
I [auth aL] | SCOP2 Family | Photosystem I reaction center subunit XI PsaL | 8107305 | 4002135 | SCOP2 (2022-06-29) |
I [auth aL] | SCOP2 Superfamily | Photosystem I reaction center subunit XI PsaL | 8107306 | 3000870 | SCOP2 (2022-06-29) |
S [auth bL] | SCOP2B Superfamily | Photosystem I reaction center subunit XI PsaL | 8107306 | 3000870 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth aA] | PF00223 | e7f4vaA1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00223 | ECOD (1.6) |
A [auth aA] | PF00223 | e7f4vaA2 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00223 | ECOD (1.6) |
K [auth bA] | PF00223 | e7f4vbA1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00223 | ECOD (1.6) |
K [auth bA] | PF00223 | e7f4vbA2 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00223 | ECOD (1.6) |
U [auth cA] | PF00223 | e7f4vcA1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00223 | ECOD (1.6) |
U [auth cA] | PF00223 | e7f4vcA2 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00223 | ECOD (1.6) |
DA [auth cM] | PF07465 | e7f4vcM1 | A: extended segments | X: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | H: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | T: Subunit XII of photosystem I reaction centre, PsaM | F: PF07465 | ECOD (1.6) |
J [auth aM] | PF07465 | e7f4vaM1 | A: extended segments | X: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | H: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | T: Subunit XII of photosystem I reaction centre, PsaM | F: PF07465 | ECOD (1.6) |
T [auth bM] | PF07465 | e7f4vbM1 | A: extended segments | X: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | H: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | T: Subunit XII of photosystem I reaction centre, PsaM | F: PF07465 | ECOD (1.6) |
B [auth aB] | PF00223 | e7f4vaB1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00223 | ECOD (1.6) |
B [auth aB] | PF00223 | e7f4vaB2 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00223 | ECOD (1.6) |
L [auth bB] | PF00223 | e7f4vbB1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00223 | ECOD (1.6) |
L [auth bB] | PF00223 | e7f4vbB2 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00223 | ECOD (1.6) |
V [auth cB] | PF00223 | e7f4vcB1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00223 | ECOD (1.6) |
V [auth cB] | PF00223 | e7f4vcB2 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00223 | ECOD (1.6) |
C [auth aC] | PF00037 | e7f4vaC1 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: PF00037 | ECOD (1.6) |
M [auth bC] | PF00037 | e7f4vbC1 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: PF00037 | ECOD (1.6) |
W [auth cC] | PF00037 | e7f4vcC1 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: PF00037 | ECOD (1.6) |
D [auth aD] | PF02531 | e7f4vaD1 | A: a+b two layers | X: Photosystem I subunit PsaD (From Topology) | H: Photosystem I subunit PsaD (From Topology) | T: Photosystem I subunit PsaD | F: PF02531 | ECOD (1.6) |
N [auth bD] | PF02531 | e7f4vbD1 | A: a+b two layers | X: Photosystem I subunit PsaD (From Topology) | H: Photosystem I subunit PsaD (From Topology) | T: Photosystem I subunit PsaD | F: PF02531 | ECOD (1.6) |
X [auth cD] | PF02531 | e7f4vcD1 | A: a+b two layers | X: Photosystem I subunit PsaD (From Topology) | H: Photosystem I subunit PsaD (From Topology) | T: Photosystem I subunit PsaD | F: PF02531 | ECOD (1.6) |
E [auth aE] | PF02427 | e7f4vaE1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF02427 | ECOD (1.6) |
O [auth bE] | PF02427 | e7f4vbE1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF02427 | ECOD (1.6) |
Y [auth cE] | PF02427 | e7f4vcE1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF02427 | ECOD (1.6) |
F [auth aF] | PF02507 | e7f4vaF1 | A: extended segments | X: Subunit III of photosystem I reaction centre, PsaF (From Topology) | H: Subunit III of photosystem I reaction centre, PsaF (From Topology) | T: Subunit III of photosystem I reaction centre, PsaF | F: PF02507 | ECOD (1.6) |
P [auth bF] | PF02507 | e7f4vbF1 | A: extended segments | X: Subunit III of photosystem I reaction centre, PsaF (From Topology) | H: Subunit III of photosystem I reaction centre, PsaF (From Topology) | T: Subunit III of photosystem I reaction centre, PsaF | F: PF02507 | ECOD (1.6) |
Z [auth cF] | PF02507 | e7f4vcF1 | A: extended segments | X: Subunit III of photosystem I reaction centre, PsaF (From Topology) | H: Subunit III of photosystem I reaction centre, PsaF (From Topology) | T: Subunit III of photosystem I reaction centre, PsaF | F: PF02507 | ECOD (1.6) |
AA [auth cI] | F_UNCLASSIFIED | e7f4vcI1 | A: extended segments | X: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | T: Subunit VIII of photosystem I reaction centre, PsaI | F: F_UNCLASSIFIED | ECOD (1.6) |
G [auth aI] | F_UNCLASSIFIED | e7f4vaI1 | A: extended segments | X: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | T: Subunit VIII of photosystem I reaction centre, PsaI | F: F_UNCLASSIFIED | ECOD (1.6) |
Q [auth bI] | F_UNCLASSIFIED | e7f4vbI1 | A: extended segments | X: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | T: Subunit VIII of photosystem I reaction centre, PsaI | F: F_UNCLASSIFIED | ECOD (1.6) |
CA [auth cL] | PF02605 | e7f4vcL1 | A: alpha bundles | X: Photosystem I reaction center subunit XI, PsaL (From Topology) | H: Photosystem I reaction center subunit XI, PsaL (From Topology) | T: Photosystem I reaction center subunit XI, PsaL | F: PF02605 | ECOD (1.6) |
I [auth aL] | PF02605 | e7f4vaL1 | A: alpha bundles | X: Photosystem I reaction center subunit XI, PsaL (From Topology) | H: Photosystem I reaction center subunit XI, PsaL (From Topology) | T: Photosystem I reaction center subunit XI, PsaL | F: PF02605 | ECOD (1.6) |
S [auth bL] | PF02605 | e7f4vbL1 | A: alpha bundles | X: Photosystem I reaction center subunit XI, PsaL (From Topology) | H: Photosystem I reaction center subunit XI, PsaL (From Topology) | T: Photosystem I reaction center subunit XI, PsaL | F: PF02605 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth aA], K [auth bA], U [auth cA] | PF00223 | Photosystem I psaA/psaB protein (PsaA_PsaB) | Photosystem I psaA/psaB protein | - | Family |
DA [auth cM], J [auth aM], T [auth bM] | PF07465 | Photosystem I protein M (PsaM) (PsaM) | Photosystem I protein M (PsaM) | - | Family |
B [auth aB], L [auth bB], V [auth cB] | PF00223 | Photosystem I psaA/psaB protein (PsaA_PsaB) | Photosystem I psaA/psaB protein | - | Family |
C [auth aC], M [auth bC], W [auth cC] | PF12838 | 4Fe-4S dicluster domain (Fer4_7) | 4Fe-4S dicluster domain | Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ... | Domain |
D [auth aD], N [auth bD], X [auth cD] | PF02531 | PsaD (PsaD) | PsaD | - | Family |
E [auth aE], O [auth bE], Y [auth cE] | PF02427 | Photosystem I reaction centre subunit IV / PsaE (PSI_PsaE) | Photosystem I reaction centre subunit IV / PsaE | PsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane [1]. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains [1]. | Domain |
F [auth aF], P [auth bF], Z [auth cF] | PF02507 | Photosystem I reaction centre subunit III (PSI_PsaF) | Photosystem I reaction centre subunit III | - | Family |
CA [auth cL], I [auth aL], S [auth bL] | PF02605 | Photosystem I reaction centre subunit XI (PsaL) | Photosystem I reaction centre subunit XI | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Photosystems | Photosystem I |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Photosystems | primordial cyanobacterial photosystem I |