7F3V | pdb_00007f3v

Crystal structure of YfiH with C107A mutation in complex with endogenous UDP-MurNAc

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	CNF1/YfiH-like putative cysteine hydrolases	8059321	3001230	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	CNF1/YfiH-like putative cysteine hydrolases	8059321	3001230	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	CNF1/YfiH-like putative cysteine hydrolases	8059321	3001230	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	CNF1/YfiH-like putative cysteine hydrolases	8059321	3001230	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Cu-oxidase_4	e7f3vD1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: CNF1/YfiH-like putative cysteine hydrolases	T: CNF1/YfiH-like putative cysteine hydrolases	F: Cu-oxidase_4	ECOD (v294.1)
C	Cu-oxidase_4	e7f3vC1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: CNF1/YfiH-like putative cysteine hydrolases	T: CNF1/YfiH-like putative cysteine hydrolases	F: Cu-oxidase_4	ECOD (v294.1)
B	Cu-oxidase_4	e7f3vB1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: CNF1/YfiH-like putative cysteine hydrolases	T: CNF1/YfiH-like putative cysteine hydrolases	F: Cu-oxidase_4	ECOD (v294.1)
A	Cu-oxidase_4	e7f3vA1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: CNF1/YfiH-like putative cysteine hydrolases	T: CNF1/YfiH-like putative cysteine hydrolases	F: Cu-oxidase_4	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF02578	Multi-copper polyphenol oxidoreductase laccase (Cu-oxidase_4)	Multi-copper polyphenol oxidoreductase laccase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Purine nucleoside phosphorylase YfiH	cation binding transition metal ion binding copper ion binding ion binding binding metal ion binding small molecule binding oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor oxidoreductase activity oxidoreductase activity, acting on diphenols and related substances as donors catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines adenosine deaminase activity hydrolase activity cation binding transition metal ion binding copper ion binding ion binding binding metal ion binding small molecule binding oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor oxidoreductase activity oxidoreductase activity, acting on diphenols and related substances as donors catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines adenosine deaminase activity hydrolase activity deaminase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds pentosyltransferase activity glycosyltransferase activity purine-nucleoside phosphorylase activity transferase activity identical protein binding protein binding protein homodimerization activity protein dimerization activity S-methyl-5-thioadenosine phosphorylase activity	glycosaminoglycan metabolic process aminoglycan metabolic process peptidoglycan metabolic process carbohydrate derivative metabolic process metabolic process cellular process macromolecule metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol extracellular region outer membrane-bounded periplasmic space cell envelope periplasmic space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR011324	Cytotoxic necrotizing factor-like, catalytic	Homologous Superfamily
A, B, C, D	IPR003730	Multi-copper polyphenol oxidoreductase	Family
A, B, C, D	IPR038371	Multi-copper polyphenol oxidoreductase superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.