7F1T

Crystal structure of the human chemokine receptor CCR5 in complex with MIP-1a

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Interleukin 8-like chemokines	8034283	3001955	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	G protein-coupled receptor-like	8091224	3000473	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	G protein-coupled receptor-like	8091224	3000473	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Rubredoxin-like	8039183	3001257	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00001	7 transmembrane receptor (rhodopsin family) (7tm_1)	7 transmembrane receptor (rhodopsin family)	-	Family
A	PF00301	Rubredoxin (Rubredoxin)	Rubredoxin	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	C-C motif chemokine 3,C-C chemokine receptor type 5,Rubredoxin,C-C chemokine receptor type 5	protein binding binding virus receptor activity exogenous protein binding molecular transducer activity coreceptor activity signaling receptor activity phosphoric ester hydrolase activity hydrolase activity, acting on ester bonds phosphoric diester hydrolase activity phospholipase C activity hydrolase activity catalytic activity phosphatidylinositol phospholipase C activity protein binding binding virus receptor activity exogenous protein binding molecular transducer activity coreceptor activity signaling receptor activity phosphoric ester hydrolase activity hydrolase activity, acting on ester bonds phosphoric diester hydrolase activity phospholipase C activity hydrolase activity catalytic activity phosphatidylinositol phospholipase C activity phospholipase activity lipase activity G protein-coupled chemoattractant receptor activity C-C chemokine receptor activity chemokine receptor activity G protein-coupled receptor activity transmembrane signaling receptor activity cytokine receptor activity immune receptor activity cytoskeletal protein binding actin binding C-C chemokine binding chemokine binding cytokine binding chemokine (C-C motif) ligand 5 binding identical protein binding CCR5 chemokine receptor binding CCR chemokine receptor binding signaling receptor binding cytokine receptor binding G protein-coupled receptor binding chemokine receptor binding kinase activity transferase activity transferase activity, transferring phosphorus-containing groups catalytic activity, acting on a protein protein kinase activity phosphotransferase activity, alcohol group as acceptor molecular function activator activity signaling receptor activator activity chemokine activity molecular function regulator activity cytokine activity signaling receptor regulator activity receptor ligand activity CCR1 chemokine receptor binding chemoattractant activity enzyme regulator activity enzyme activator activity phospholipase activator activity lipase activator activity electron transfer activity cation binding transition metal ion binding iron ion binding ion binding metal ion binding small molecule binding	regulation of cellular process leukocyte apoptotic process negative regulation of biological process regulation of programmed cell death macrophage apoptotic process negative regulation of leukocyte apoptotic process negative regulation of cellular process myeloid cell apoptotic process regulation of leukocyte apoptotic process regulation of biological process negative regulation of programmed cell death regulation of apoptotic process biological regulation negative regulation of macrophage apoptotic process regulation of cellular process leukocyte apoptotic process negative regulation of biological process regulation of programmed cell death macrophage apoptotic process negative regulation of leukocyte apoptotic process negative regulation of cellular process myeloid cell apoptotic process regulation of leukocyte apoptotic process regulation of biological process negative regulation of programmed cell death regulation of apoptotic process biological regulation negative regulation of macrophage apoptotic process cell death negative regulation of apoptotic process regulation of macrophage apoptotic process inflammatory cell apoptotic process cellular process negative regulation of myeloid cell apoptotic process apoptotic process regulation of myeloid cell apoptotic process programmed cell death positive regulation of cytosolic calcium ion concentration regulation of biological quality response to stimulus immune response immune system process response to organic substance response to sterol response to lipid response to alcohol response to chemical response to oxygen-containing compound response to cholesterol response to organic cyclic compound signaling cell-cell signaling cell communication cellular response to stimulus biological process involved in interspecies interaction between organisms response to other organism cellular response to lipopolysaccharide response to external stimulus cellular response to molecule of bacterial origin response to lipopolysaccharide cellular response to oxygen-containing compound response to biotic stimulus cellular response to biotic stimulus cellular response to chemical stimulus response to bacterium cellular response to lipid cellular response to organic substance response to external biotic stimulus response to molecule of bacterial origin intracellular signal transduction calcium-mediated signaling intracellular signaling cassette signal transduction MAPK cascade chemotaxis taxis locomotion cell chemotaxis dendritic cell chemotaxis leukocyte migration dendritic cell migration mononuclear cell migration cell migration cell motility leukocyte chemotaxis cell surface receptor signaling pathway defense response response to stress cellular defense response localization transport monoatomic ion transport monoatomic cation transport establishment of localization calcium ion transport metal ion transport inflammatory response G protein-coupled receptor signaling pathway regulation of localization cellular localization inorganic ion homeostasis intracellular calcium ion homeostasis homeostatic process monoatomic ion transmembrane transport sarcoplasmic reticulum calcium ion transport calcium ion homeostasis release of sequestered calcium ion into cytosol by sarcoplasmic reticulum negative regulation of sequestering of calcium ion maintenance of location in cell monoatomic cation transmembrane transport intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis regulation of sequestering of calcium ion intracellular monoatomic ion homeostasis release of sequestered calcium ion into cytosol by endoplasmic reticulum calcium ion transmembrane import into cytosol sequestering of calcium ion inorganic ion transmembrane transport inorganic cation transmembrane transport maintenance of location transmembrane transport release of sequestered calcium ion into cytosol cellular homeostasis chemical homeostasis calcium ion transmembrane transport positive regulation of cell communication positive regulation of signal transduction positive regulation of biological process regulation of signal transduction positive regulation of response to stimulus regulation of intracellular signal transduction regulation of calcium-mediated signaling positive regulation of calcium-mediated signaling positive regulation of cellular process regulation of signaling positive regulation of intracellular signal transduction regulation of response to stimulus regulation of cell communication positive regulation of signaling developmental process multicellular organismal process cellular developmental process glial cell migration nervous system development neurogenesis multicellular organism development gliogenesis cell differentiation anatomical structure development astrocyte cell migration system development cell activation regulation of defense response regulation of response to external stimulus regulation of inflammatory response positive regulation of response to external stimulus positive regulation of inflammatory response regulation of response to stress positive regulation of defense response positive regulation of locomotion regulation of cell motility regulation of microglial cell migration macrophage migration regulation of glial cell migration positive regulation of cell migration regulation of macrophage migration positive regulation of cell motility regulation of cell migration myeloid leukocyte migration positive regulation of mononuclear cell migration positive regulation of microglial cell migration regulation of immune system process regulation of mononuclear cell migration positive regulation of immune system process positive regulation of macrophage migration regulation of leukocyte migration microglial cell migration positive regulation of leukocyte migration positive regulation of glial cell migration regulation of locomotion positive regulation of chemotaxis regulation of lymphocyte chemotaxis natural killer cell chemotaxis positive regulation of natural killer cell chemotaxis regulation of leukocyte chemotaxis positive regulation of lymphocyte migration lymphocyte migration positive regulation of leukocyte chemotaxis regulation of natural killer cell chemotaxis lymphocyte chemotaxis regulation of lymphocyte migration positive regulation of lymphocyte chemotaxis regulation of chemotaxis cellular biosynthetic process positive regulation of cellular metabolic process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process organic substance metabolic process positive regulation of biosynthetic process organic substance biosynthetic process positive regulation of macromolecule metabolic process regulation of biosynthetic process cellular metabolic process regulation of cellular metabolic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of cellular biosynthetic process regulation of gene expression biosynthetic process positive regulation of gene expression regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of metabolic process positive regulation of cellular biosynthetic process neutrophil chemotaxis neutrophil migration granulocyte migration granulocyte chemotaxis neuron apoptotic process positive regulation of programmed cell death positive regulation of apoptotic process positive regulation of neuron apoptotic process regulation of neuron apoptotic process myeloid leukocyte differentiation regulation of leukocyte differentiation regulation of developmental process cell development regulation of cell differentiation regulation of cell development regulation of osteoclast differentiation osteoclast differentiation regulation of multicellular organismal process negative regulation of cell differentiation negative regulation of hemopoiesis regulation of multicellular organismal development negative regulation of leukocyte differentiation hemopoiesis regulation of myeloid cell differentiation negative regulation of developmental process regulation of myeloid leukocyte differentiation negative regulation of myeloid cell differentiation negative regulation of osteoclast differentiation negative regulation of myeloid leukocyte differentiation negative regulation of cell development myeloid cell differentiation negative regulation of immune system process regulation of hemopoiesis negative regulation of multicellular organismal process leukocyte differentiation response to toxic substance regulation of behavior behavior interleukin-1 production regulation of interleukin-1 beta production positive regulation of interleukin-1 beta production regulation of cytokine production cytokine production positive regulation of interleukin-1 production regulation of interleukin-1 production interleukin-1 beta production positive regulation of multicellular organismal process positive regulation of cytokine production cellular component organization organelle organization cellular component organization or biogenesis cytoskeleton organization regulation of macrophage activation positive regulation of macrophage activation regulation of leukocyte activation positive regulation of microglial cell activation regulation of cell activation positive regulation of neuroinflammatory response myeloid leukocyte activation leukocyte activation macrophage activation positive regulation of cell activation leukocyte activation involved in inflammatory response regulation of neuroinflammatory response positive regulation of leukocyte activation microglial cell activation glial cell activation regulation of microglial cell activation neuroinflammatory response regulated exocytosis eosinophil activation cell activation involved in immune response leukocyte degranulation myeloid leukocyte mediated immunity vesicle-mediated transport secretion by cell establishment of localization in cell leukocyte activation involved in immune response eosinophil degranulation leukocyte mediated immunity eosinophil activation involved in immune response secretion export from cell myeloid cell activation involved in immune response immune effector process exocytosis eosinophil mediated immunity granulocyte activation regulation of calcium ion import regulation of calcium ion transport positive regulation of calcium ion transport positive regulation of calcium ion import regulation of transport regulation of monoatomic ion transport positive regulation of transport positive regulation of monoatomic ion transport calcium ion import regulation of metal ion transport eosinophil chemotaxis eosinophil migration response to cytokine cellular response to interleukin-1 cellular response to cytokine stimulus response to interleukin-1 ossification osteoblast differentiation viral gene expression negative regulation by host of viral transcription modulation by host of symbiont process viral process biological process involved in interaction with symbiont viral transcription biological process involved in symbiotic interaction positive regulation of ERK1 and ERK2 cascade positive regulation of MAPK cascade regulation of MAPK cascade ERK1 and ERK2 cascade regulation of ERK1 and ERK2 cascade system process nervous system process regulation of system process sensory perception of pain regulation of nervous system process sensory perception regulation of sensory perception regulation of sensory perception of pain response to chemokine cytokine-mediated signaling pathway cellular response to chemokine chemokine-mediated signaling pathway regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction phosphatidylinositol 3-kinase/protein kinase B signal transduction regulation of cell shape cell morphogenesis regulation of cell morphogenesis anatomical structure morphogenesis regulation of anatomical structure morphogenesis cellular response to tumor necrosis factor response to tumor necrosis factor response to type II interferon cellular response to type II interferon innate immune response defense response to symbiont defense response to other organism monocyte chemotaxis macrophage chemotaxis negative regulation of cellular metabolic process negative regulation of macromolecule metabolic process negative regulation of metabolic process negative regulation of cellular biosynthetic process negative regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of tumor necrosis factor production positive regulation of tumor necrosis factor superfamily cytokine production tumor necrosis factor superfamily cytokine production positive regulation of tumor necrosis factor production tumor necrosis factor production regulation of tumor necrosis factor superfamily cytokine production T cell chemotaxis T cell migration negative regulation of biomineral tissue development regulation of biomineral tissue development regulation of bone mineralization negative regulation of bone mineralization biomineral tissue development bone mineralization animal organ development tissue development negative regulation of ossification regulation of ossification	cell periphery cell surface membrane plasma membrane cellular anatomical entity external side of plasma membrane side of membrane intracellular anatomical structure cytoplasm membrane-bounded organelle endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system cell periphery cell surface membrane plasma membrane cellular anatomical entity external side of plasma membrane side of membrane intracellular anatomical structure cytoplasm membrane-bounded organelle endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle organelle vesicle cytosol extracellular region extracellular space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR000276	G protein-coupled receptor, rhodopsin-like	Family
A	IPR017452	GPCR, rhodopsin-like, 7TM	Domain
A	IPR000355	Chemokine receptor family	Family
A	IPR002240	CC chemokine receptor 5	Family
A	IPR001811	Chemokine interleukin-8-like domain	Domain
A	IPR000827	CC chemokine, conserved site	Conserved Site
A	IPR036048	Chemokine interleukin-8-like superfamily	Homologous Superfamily
A	IPR039809	Chemokine beta/gamma/delta	Family
A	IPR018527	Rubredoxin, iron-binding site	Binding Site
A	IPR024922	Rubredoxin	Family
A	IPR024934	Rubredoxin-like domain	Domain
A	IPR024935	Rubredoxin domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: P10147	hepatitis C virus infection type 1 diabetes mellitus 22 nephritis West Nile fever inflammatory bowel disease Kidney Failure, Acute acquired metabolic disease psoriasis schizophrenia autoimmune disease tuberculosis celiac disease ulcerative colitis dermatitis, atopic glioblastoma hepatitis C virus infection type 1 diabetes mellitus 22 nephritis West Nile fever inflammatory bowel disease Kidney Failure, Acute acquired metabolic disease psoriasis schizophrenia autoimmune disease tuberculosis celiac disease ulcerative colitis dermatitis, atopic glioblastoma hepatocellular carcinoma interstitial cystitis lung cancer osteosarcoma acute kidney failure rheumatoid arthritis AIDS Sjogren syndrome cancer type 1 diabetes mellitus chronic obstructive pulmonary disease diabetes mellitus head and neck cancer IgA glomerulonephritis invasive ductal breast carcinoma malignant glioma pilocytic astrocytoma sarcoidosis atopic eczema subependymal giant cell astrocytoma cutaneous lupus erythematosus ductal breast carcinoma in situ West-Nile encephalitis status epilepticus HIV infectious disease glomerulonephritis Inflammation malignant mesothelioma pulmonary fibrosis allergic disease brain ischemia atherosclerosis adult acute respiratory distress syndrome arthritic joint disease autoimmune disease cancer hepatocellular carcinoma influenza lung carcinoma myocardial ischemia pneumonia coronary artery disease idiopathic interstitial pneumonia ischemia reperfusion injury arteriosclerosis disorder psoriasis susceptibility to HIV infection COVID-19

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A	OPM	Transmembrane	Alpha-helical polytopic	Rhodopsin-like receptors and pumps	G-protein coupled receptors, family A

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A	MemProtMD	Annotated as membrane protein by MemProtMD

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.