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 7EGM | pdb_00007egm

The SRM module of SWI/SNF-nucleosome complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B SuperfamilyHomeodomain-like 8056063 3000001 SCOP2B (2022-06-29)
H [auth E]SCOP2B SuperfamilyHomeodomain-like 8056063 3000001 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ACUBe7egmA01 A: alpha arraysX: Rossmann-likeH: Rossmann-relatedT: FAD/NAD(P)-binding domainF: CUBECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
D,
H [auth E]
PF00249Myb-like DNA-binding domain (Myb_DNA-binding)Myb-like DNA-binding domainThis family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1]. Domain
D,
H [auth E]
PF16495SWIRM-associated region 1 (SWIRM-assoc_1)SWIRM-associated region 1- Family
D,
H [auth E]
PF04433SWIRM domain (SWIRM)SWIRM domainThis SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in chromosomal proteins. It contains a helix-turn helix motif and binds to DNA [1]. Domain
PF04855SNF5/SMARCB1/INI1 PFU-like domain (SNF5)SNF5/SMARCB1/INI1 PFU-like domainThis entry represents a PFU-like domain found in the SNF5/SMARCB1/INI1 family of proteins. SNF5 is a component of the yeast SWI/SNF complex, which is an ATP-dependent nucleosome-remodelling complex that regulates the transcription of a subset of yeas ...This entry represents a PFU-like domain found in the SNF5/SMARCB1/INI1 family of proteins. SNF5 is a component of the yeast SWI/SNF complex, which is an ATP-dependent nucleosome-remodelling complex that regulates the transcription of a subset of yeast genes. SNF5 is a key component of all SWI/SNF-class complexes characterised so far [1]. This family consists of the conserved region of SNF5, including a direct repeat motif. SNF5 is essential for the assembly promoter targeting and chromatin remodelling activity of the SWI-SNF complex [2]. SNF5 is also known as SMARCB1, for SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin, subfamily b, member 1, and also INI1 for integrase interactor 1. Loss-of function mutations in SNF5 are thought to contribute to oncogenesis in malignant rhabdoid tumours (MRTs) [3].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
G [auth J]SWI/SNF global transcription activator complex subunit SWP82
F [auth I]Transcription regulatory protein SNF6
E [auth H]Transcription regulatory protein SNF12
D,
H [auth E]
SWI/SNF complex subunit SWI3
SWI/SNF chromatin-remodeling complex subunit SNF5
SWI/SNF chromatin-remodeling complex subunit SWI1
Transcription regulatory protein SNF2

InterPro: Protein Family Classification InterPro Database Homepage