Crystal structure of SdgB (complexed with UDP, GlcNAc, and Glycosylated peptide)
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B [auth C] | Ring_hydroxyl_B | e7ec3C2 | A: beta meanders | X: O-GlcNAc transferase GtfA beta-meander domain (From Topology) | H: O-GlcNAc transferase GtfA beta-meander domain (From Topology) | T: O-GlcNAc transferase GtfA beta-meander domain | F: Ring_hydroxyl_B | ECOD (1.6) |
| B [auth C] | Glycos_transf_1 | e7ec3C1 | A: a/b three-layered sandwiches | X: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology) | H: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology) | T: UDP-Glycosyltransferase/glycogen phosphorylase | F: Glycos_transf_1 | ECOD (1.6) |
| B [auth C] | TIGR02918_1st | e7ec3C3 | A: a/b three-layered sandwiches | X: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology) | H: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology) | T: UDP-Glycosyltransferase/glycogen phosphorylase | F: TIGR02918_1st | ECOD (1.6) |
| A | Ring_hydroxyl_B | e7ec3A3 | A: beta meanders | X: O-GlcNAc transferase GtfA beta-meander domain (From Topology) | H: O-GlcNAc transferase GtfA beta-meander domain (From Topology) | T: O-GlcNAc transferase GtfA beta-meander domain | F: Ring_hydroxyl_B | ECOD (1.6) |
| A | Glycos_transf_1 | e7ec3A2 | A: a/b three-layered sandwiches | X: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology) | H: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology) | T: UDP-Glycosyltransferase/glycogen phosphorylase | F: Glycos_transf_1 | ECOD (1.6) |
| A | TIGR02918_1st | e7ec3A1 | A: a/b three-layered sandwiches | X: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology) | H: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology) | T: UDP-Glycosyltransferase/glycogen phosphorylase | F: TIGR02918_1st | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B [auth C] | 3.40.50.2000 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Glycogen Phosphorylase B | CATH (utative) |
| A | 3.40.50.2000 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Glycogen Phosphorylase B | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| A, B [auth C] | PF00534 | Glycosyl transferases group 1 (Glycos_transf_1) | Glycosyl transferases group 1 | Mutations in this domain of Swiss:P37287 lead to disease (Paroxysmal Nocturnal haemoglobinuria). Members of this family transfer activated sugars to a variety of substrates, including glycogen, Fructose-6-phosphate and lipopolysaccharides. Members o ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| C [auth D], D [auth G] | 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-35)-[2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-65)]5,6-DIHYDRO-BENZO[H]CINNOLIN-3-YLAMINE | - | - | - |
| A, B [auth C] | Glycosyl transferase, group 1 family protein | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| A, B [auth C] | IPR001296 | Glycosyl transferase, family 1 | Domain |














