7EA3 | pdb_00007ea3

Intact Ypt32-TRAPPII (dimer).

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
R [auth S]SCOP2B SuperfamilyLigand-binding domain in the NO signalling and Golgi transport 8065542 3001668 SCOP2B (2022-06-29)
O [auth P]SCOP2B SuperfamilyLigand-binding domain in the NO signalling and Golgi transport 8065542 3001668 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyLigand-binding domain in the NO signalling and Golgi transport 8065542 3001668 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyLigand-binding domain in the NO signalling and Golgi transport 8065542 3001668 SCOP2B (2022-06-29)
P [auth Q]SCOP2B SuperfamilySNARE-like 8090321 3001113 SCOP2B (2022-06-29)
DSCOP2B SuperfamilySNARE-like 8090321 3001113 SCOP2B (2022-06-29)
X [auth Y]SCOP2B SuperfamilyRas-like P-loop GTPases 8056347 3002022 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyRas-like P-loop GTPases 8056347 3002022 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
M [auth N]CoV_NSP8e7ea3N1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: CoV_NSP8ECOD (v294.2)
ACoV_NSP8e7ea3A1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: CoV_NSP8ECOD (v294.2)
N [auth O]TIL_OTOGL_Mucine7ea3O1 A: beta barrelsX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: TIL_OTOGL_MucinECOD (v294.2)
BTIL_OTOGL_Mucine7ea3B1 A: beta barrelsX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: TIL_OTOGL_MucinECOD (v294.2)
R [auth S]CoV_NSP8e7ea3S1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: CoV_NSP8ECOD (v294.2)
O [auth P]CoV_NSP8e7ea3P1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: CoV_NSP8ECOD (v294.2)
FCoV_NSP8e7ea3F1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: CoV_NSP8ECOD (v294.2)
CCoV_NSP8e7ea3C1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: CoV_NSP8ECOD (v294.2)
P [auth Q]CoV_NSP8e7ea3Q1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: CoV_NSP8ECOD (v294.2)
DCoV_NSP8e7ea3D1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: CoV_NSP8ECOD (v294.2)
T [auth U]CoV_NSP8e7ea3U1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: CoV_NSP8ECOD (v294.2)
HCoV_NSP8e7ea3H1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: CoV_NSP8ECOD (v294.2)
W [auth X]CoV_NSP8e7ea3X1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: CoV_NSP8ECOD (v294.2)
KCoV_NSP8e7ea3K1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: CoV_NSP8ECOD (v294.2)
Q [auth R]CoV_NSP8e7ea3R1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: CoV_NSP8ECOD (v294.2)
ECoV_NSP8e7ea3E1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: CoV_NSP8ECOD (v294.2)
X [auth Y]CoV_NSP8e7ea3Y1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: CoV_NSP8ECOD (v294.2)
LCoV_NSP8e7ea3L1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: CoV_NSP8ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
M [auth N]		PF04628Sedlin (Sedlin_N)Sedlin- Family
B,
N [auth O]		PF04051Transport protein particle (TRAPP) component (TRAPP)Transport protein particle (TRAPP) component- Family
C,
F,
O [auth P],
R [auth S]		PF04051Transport protein particle (TRAPP) component (TRAPP)Transport protein particle (TRAPP) component- Family
D,
P [auth Q]		PF04099Sybindin-like family (Sybindin)Sybindin-like family- Family
G,
S [auth T]		PF04051Transport protein particle (TRAPP) component (TRAPP)Transport protein particle (TRAPP) component- Family
H,
T [auth U]		PF04628Sedlin (Sedlin_N)Sedlin- Family
I,
U [auth V]		PF12584TRAPPC10 C-terminal domain (TRAPPC10_C)TRAPPC10 C-terminal domainThis domain forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1 [1,2]. Domain
I,
U [auth V]		PF24967TR130 NTS domain (NTS_TR130)TR130 NTS domain- Repeat
I,
U [auth V]		PF24966TR130 second Ig-like domain (Ig_TR130_2nd)TR130 second Ig-like domainThis domain is found in the yeast Trafficking protein particle complex II-specific subunit 130 (TR130) and related proteins. TRS130 plays a role in the YPT GEF activity of TRAPP II in concert with the two other TRAPP II-specific subunits TRS65 and TR ...This domain is found in the yeast Trafficking protein particle complex II-specific subunit 130 (TR130) and related proteins. TRS130 plays a role in the YPT GEF activity of TRAPP II in concert with the two other TRAPP II-specific subunits TRS65 and TRS120. This protein contains four Ig-like domains arranged in tandem [1]. This entry represents the second of these domains.
Domain
J,
V [auth W]		PF26254Trs120/TRAPPC9, first Ig-like domain (Ig_TRAPPC9-Trs120_1st)Trs120/TRAPPC9, first Ig-like domainThis domain is found in the middle region of Saccharomyces cerevisiae Trs120 protein (Swiss:Q04183) and in human Trafficking protein particle complex subunit 9 (TRAPPC9). It is predicted to have an Ig-like fold. Trs120 is a subunit of the multiprotei ...This domain is found in the middle region of Saccharomyces cerevisiae Trs120 protein (Swiss:Q04183) and in human Trafficking protein particle complex subunit 9 (TRAPPC9). It is predicted to have an Ig-like fold. Trs120 is a subunit of the multiprotein complex TRAPP (transport particle protein) which functions in ER to Golgi traffic [1]. Trs120 is specific to the larger TRAPP complex, TRAPP II, along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way [2]. It is likely that there is a complex function for TRAPP II in multiple pathways [3].
Domain
J,
V [auth W]		PF26251Trs120/TRAPPC9 TPR (TPR_TRAPPC9-Trs120)Trs120/TRAPPC9 TPR- Repeat
J,
V [auth W]		PF26283Trs120/TRAPPC9, fourth Ig-like domain (Ig_TRAPPC9-Trs120_4th)Trs120/TRAPPC9, fourth Ig-like domainThis entry represents the fourth Ig-like domain found in the middle region of Saccharomyces cerevisiae Trs120 protein (Swiss:Q04183), the in human Trafficking protein particle complex subunit 9 (TRAPPC9) and related proteins. Trs120 is a subunit of t ...This entry represents the fourth Ig-like domain found in the middle region of Saccharomyces cerevisiae Trs120 protein (Swiss:Q04183), the in human Trafficking protein particle complex subunit 9 (TRAPPC9) and related proteins. Trs120 is a subunit of the multiprotein complex TRAPP (transport particle protein) which functions in ER to Golgi traffic [1]. Trs120 is specific to the larger TRAPP complex, TRAPP II, along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way [2]. It is likely that there is a complex function for TRAPP II in multiple pathways [3].
Domain
J,
V [auth W]		PF26282Trs120/TRAPPC9, third Ig-like domain (Ig_TRAPPC9-Trs120_3rd)Trs120/TRAPPC9, third Ig-like domainThis entry represents the third Ig-like domain found in the middle region of Saccharomyces cerevisiae Trs120 protein (Swiss:Q04183), the in human Trafficking protein particle complex subunit 9 (TRAPPC9) and related proteins. Trs120 is a subunit of th ...This entry represents the third Ig-like domain found in the middle region of Saccharomyces cerevisiae Trs120 protein (Swiss:Q04183), the in human Trafficking protein particle complex subunit 9 (TRAPPC9) and related proteins. Trs120 is a subunit of the multiprotein complex TRAPP (transport particle protein) which functions in ER to Golgi traffic [1]. Trs120 is specific to the larger TRAPP complex, TRAPP II, along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way [2]. It is likely that there is a complex function for TRAPP II in multiple pathways [3].
Domain
E,
Q [auth R]		PF04099Sybindin-like family (Sybindin)Sybindin-like family- Family
L,
X [auth Y]		PF00071Ras family (Ras)Ras familyIncludes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motili ...Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
M [auth N]		TRAPP-associated protein TCA17-
B,
N [auth O]		Trafficking protein particle complex subunit 33-
C,
F,
O [auth P],
R [auth S]		Trafficking protein particle complex subunit BET3-
D,
P [auth Q]		Trafficking protein particle complex subunit BET5-
G,
S [auth T]		Trafficking protein particle complex subunit 31-
H,
T [auth U]		Trafficking protein particle complex subunit 20-
I,
U [auth V]		Trafficking protein particle complex II-specific subunit 130-
J,
V [auth W]		Trafficking protein particle complex II-specific subunit 120-
K,
W [auth X]		Trafficking protein particle complex II-specific subunit 65-
E,
Q [auth R]		Trafficking protein particle complex subunit 23-
L,
X [auth Y]		GTP-binding protein YPT32/YPT11

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
M [auth N]		IPR011012Longin-like domain superfamilyHomologous Superfamily
A,
M [auth N]		IPR006722Trafficking protein particle complex subunit 2Family
B,
N [auth O]		IPR024096NO signalling/Golgi transport ligand-binding domain superfamilyHomologous Superfamily
B,
N [auth O]		IPR007194Transport protein particle (TRAPP) componentFamily
B,
N [auth O]		IPR037992TRAPP complex, Trs33 subunitFamily
C,
F,
O [auth P],
R [auth S]		IPR024096NO signalling/Golgi transport ligand-binding domain superfamilyHomologous Superfamily
C,
F,
O [auth P],
R [auth S]		IPR007194Transport protein particle (TRAPP) componentFamily
C,
F,
O [auth P],
R [auth S]		IPR016721Bet3 familyFamily
D,
P [auth Q]		IPR007233Trafficking protein particle complex subunitFamily
D,
P [auth Q]		IPR011012Longin-like domain superfamilyHomologous Superfamily
G,
S [auth T]		IPR024096NO signalling/Golgi transport ligand-binding domain superfamilyHomologous Superfamily
G,
S [auth T]		IPR016696TRAPP I complex, subunit 5Family
G,
S [auth T]		IPR007194Transport protein particle (TRAPP) componentFamily
H,
T [auth U]		IPR011012Longin-like domain superfamilyHomologous Superfamily
H,
T [auth U]		IPR006722Trafficking protein particle complex subunit 2Family
I,
U [auth V]		IPR056915Trs130, second Ig-like domainDomain
I,
U [auth V]		IPR022233TRAPPC10/Trs130, C-terminalDomain
I,
U [auth V]		IPR056916Trs130, NTS domainDomain
I,
U [auth V]		IPR045126Trafficking protein particle complex subunit TRAPPC10/Trs130Family
I,
U [auth V]		IPR056913TRAPPC10/Trs130, N-terminalDomain
J,
V [auth W]		IPR058568Trs120/TRAPPC9, fourth Ig-like domainDomain
J,
V [auth W]		IPR058567Trs120/TRAPPC9, third Ig-like domainDomain
J,
V [auth W]		IPR058564Trs120/TRAPPC9, TPR regionDomain
J,
V [auth W]		IPR058563Trs120/TRAPPC9, N-terminal domainDomain
J,
V [auth W]		IPR013935Trs120/TRAPPC9Family
J,
V [auth W]		IPR058565Trs120/TRAPPC9, first Ig-like domainDomain
K,
W [auth X]		IPR055426Trafficking protein particle complex II-specific subunit 65, IgD2Domain
K,
W [auth X]		IPR024662Trafficking protein particle complex II-specific subunit 65Family
K,
W [auth X]		IPR055425Trafficking protein particle complex II-specific subunit 65, IgD1Domain
K,
W [auth X]		IPR055420Trafficking protein particle complex II-specific subunit 65, IgD3Domain
E,
Q [auth R]		IPR007233Trafficking protein particle complex subunitFamily
E,
Q [auth R]		IPR011012Longin-like domain superfamilyHomologous Superfamily
L,
X [auth Y]		IPR005225Small GTP-binding domainDomain
L,
X [auth Y]		IPR001806Small GTPaseFamily
L,
X [auth Y]		IPR050209Membrane trafficking Rab GTPasesFamily
L,
X [auth Y]		IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily