7EA3

Intact Ypt32-TRAPPII (dimer).

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
CSCOP2B SuperfamilyLigand-binding domain in the NO signalling and Golgi transport8065542 3001668 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyLigand-binding domain in the NO signalling and Golgi transport8065542 3001668 SCOP2B (2022-06-29)
O [auth P]SCOP2B SuperfamilyLigand-binding domain in the NO signalling and Golgi transport8065542 3001668 SCOP2B (2022-06-29)
R [auth S]SCOP2B SuperfamilyLigand-binding domain in the NO signalling and Golgi transport8065542 3001668 SCOP2B (2022-06-29)
DSCOP2B SuperfamilySNARE-like8090321 3001113 SCOP2B (2022-06-29)
P [auth Q]SCOP2B SuperfamilySNARE-like8090321 3001113 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyRas-like P-loop GTPases8056347 3002022 SCOP2B (2022-06-29)
X [auth Y]SCOP2B SuperfamilyRas-like P-loop GTPases8056347 3002022 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF04628e7ea3A1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: PF04628ECOD (1.6)
M [auth N]PF04628e7ea3N1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: PF04628ECOD (1.6)
BPF04051e7ea3B1 A: a+b complex topologyX: H-NOX domain (From Topology)H: H-NOX domain (From Topology)T: H-NOX domainF: PF04051ECOD (1.6)
N [auth O]PF04051e7ea3O1 A: a+b complex topologyX: H-NOX domain (From Topology)H: H-NOX domain (From Topology)T: H-NOX domainF: PF04051ECOD (1.6)
CPF04051e7ea3C1 A: a+b complex topologyX: H-NOX domain (From Topology)H: H-NOX domain (From Topology)T: H-NOX domainF: PF04051ECOD (1.6)
FPF04051e7ea3F1 A: a+b complex topologyX: H-NOX domain (From Topology)H: H-NOX domain (From Topology)T: H-NOX domainF: PF04051ECOD (1.6)
O [auth P]PF04051e7ea3P1 A: a+b complex topologyX: H-NOX domain (From Topology)H: H-NOX domain (From Topology)T: H-NOX domainF: PF04051ECOD (1.6)
R [auth S]PF04051e7ea3S1 A: a+b complex topologyX: H-NOX domain (From Topology)H: H-NOX domain (From Topology)T: H-NOX domainF: PF04051ECOD (1.6)
DPF04099e7ea3D1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: PF04099ECOD (1.6)
P [auth Q]PF04099e7ea3Q1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: PF04099ECOD (1.6)
EPF04099e7ea3E1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: PF04099ECOD (1.6)
Q [auth R]PF04099e7ea3R1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: PF04099ECOD (1.6)
KF_UNCLASSIFIEDe7ea3K1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: F_UNCLASSIFIEDECOD (1.6)
KPF12735e7ea3K2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF12735ECOD (1.6)
W [auth X]F_UNCLASSIFIEDe7ea3X1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: F_UNCLASSIFIEDECOD (1.6)
W [auth X]PF12735e7ea3X2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF12735ECOD (1.6)
LPF00071e7ea3L1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00071ECOD (1.6)
X [auth Y]PF00071e7ea3Y1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00071ECOD (1.6)
HPF04628e7ea3H1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: PF04628ECOD (1.6)
T [auth U]PF04628e7ea3U1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: PF04628ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
M [auth N]		PF04628Sedlin, N-terminal conserved region (Sedlin_N)Sedlin, N-terminal conserved region- Family
B,
N [auth O]		PF04051Transport protein particle (TRAPP) component (TRAPP)Transport protein particle (TRAPP) component- Family
C,
F,
O [auth P],
R [auth S]		PF04051Transport protein particle (TRAPP) component (TRAPP)Transport protein particle (TRAPP) component- Family
D,
P [auth Q]		PF04099Sybindin-like family (Sybindin)Sybindin-like family- Family
E,
Q [auth R]		PF04099Sybindin-like family (Sybindin)Sybindin-like family- Family
G,
S [auth T]		PF04051Transport protein particle (TRAPP) component (TRAPP)Transport protein particle (TRAPP) component- Family
J,
V [auth W]		PF08626Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit (TRAPPC9-Trs120)Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit- Family
K,
W [auth X]		PF12735TRAPP trafficking subunit Trs65 (Trs65)TRAPP trafficking subunit Trs65- Family
L,
X [auth Y]		PF00071Ras family (Ras)Ras familyIncludes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motil ...Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices [1].
Domain
H,
T [auth U]		PF04628Sedlin, N-terminal conserved region (Sedlin_N)Sedlin, N-terminal conserved region- Family
I,
U [auth V]		PF12584Trafficking protein particle complex subunit 10, TRAPPC10 (TRAPPC10)Trafficking protein particle complex subunit 10, TRAPPC10- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
M [auth N]		TRAPP-associated protein TCA17-
B,
N [auth O]		Trafficking protein particle complex subunit 33-
C,
F,
O [auth P],
R [auth S]		Trafficking protein particle complex subunit BET3-
D,
P [auth Q]		Trafficking protein particle complex subunit BET5-
E,
Q [auth R]		Trafficking protein particle complex subunit 23-
G,
S [auth T]		Trafficking protein particle complex subunit 31-
J,
V [auth W]		Trafficking protein particle complex II-specific subunit 120-
K,
W [auth X]		Trafficking protein particle complex II-specific subunit 65-
L,
X [auth Y]		GTP-binding protein YPT32/YPT11
H,
T [auth U]		Trafficking protein particle complex subunit 20-
I,
U [auth V]		Trafficking protein particle complex II-specific subunit 130-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
M [auth N]		IPR011012Longin-like domain superfamilyHomologous Superfamily
A,
M [auth N]		IPR006722Trafficking protein particle complex subunit 2Family
B,
N [auth O]		IPR024096NO signalling/Golgi transport ligand-binding domain superfamilyHomologous Superfamily
B,
N [auth O]		IPR007194Transport protein particle (TRAPP) componentFamily
B,
N [auth O]		IPR037992TRAPP complex, Trs33 subunitFamily
C,
F,
O [auth P],
R [auth S]		IPR024096NO signalling/Golgi transport ligand-binding domain superfamilyHomologous Superfamily
C,
F,
O [auth P],
R [auth S]		IPR007194Transport protein particle (TRAPP) componentFamily
C,
F,
O [auth P],
R [auth S]		IPR016721Bet3 familyFamily
D,
P [auth Q]		IPR007233Trafficking protein particle complex subunitFamily
D,
P [auth Q]		IPR011012Longin-like domain superfamilyHomologous Superfamily
E,
Q [auth R]		IPR007233Trafficking protein particle complex subunitFamily
E,
Q [auth R]		IPR011012Longin-like domain superfamilyHomologous Superfamily
G,
S [auth T]		IPR024096NO signalling/Golgi transport ligand-binding domain superfamilyHomologous Superfamily
G,
S [auth T]		IPR016696TRAPP I complex, subunit 5Family
G,
S [auth T]		IPR007194Transport protein particle (TRAPP) componentFamily
J,
V [auth W]		IPR013935TRAPP II complex, Trs120Family
K,
W [auth X]		IPR024662Trafficking protein particle complex II-specific subunit 65Family
L,
X [auth Y]		IPR001806Small GTPaseFamily
L,
X [auth Y]		IPR005225Small GTP-binding protein domainDomain
L,
X [auth Y]		IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
H,
T [auth U]		IPR011012Longin-like domain superfamilyHomologous Superfamily
H,
T [auth U]		IPR006722Trafficking protein particle complex subunit 2Family
I,
U [auth V]		IPR022233TRAPP II complex TRAPPC10, C-terminalDomain
I,
U [auth V]		IPR045126Trafficking protein particle complex subunit TRAPPC10/Trs130Family