7DPD | pdb_00007dpd

Human MCM9 N-terminal domain

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	MCM_OB	e7dpdA1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: MCM_OB	ECOD (1.6)
A	F_UNCLASSIFIED	e7dpdA2	A: a+b complex topology	X: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)	H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)	T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54)	F: F_UNCLASSIFIED	ECOD (1.6)
A	F_UNCLASSIFIED	e7dpdA3	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: F_UNCLASSIFIED	ECOD (1.6)
B	MCM_OB	e7dpdB1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: MCM_OB	ECOD (1.6)
B	F_UNCLASSIFIED	e7dpdB2	A: a+b complex topology	X: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)	H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)	T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54)	F: F_UNCLASSIFIED	ECOD (1.6)
B	F_UNCLASSIFIED	e7dpdB3	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: F_UNCLASSIFIED	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF26066	MCM9, N-terminal domain (MCM9_N)	MCM9, N-terminal domain	This domain is found N-terminal in the DNA helicase MCM9 and related proteins. MCM9 is a component of MCM8/MCM9 complex which is involved in homologous recombination repair pathway. Its dysfunction can cause genome instability. MCM8/MCM9 complex form ...	This domain is found N-terminal in the DNA helicase MCM9 and related proteins. MCM9 is a component of MCM8/MCM9 complex which is involved in homologous recombination repair pathway. Its dysfunction can cause genome instability. MCM8/MCM9 complex forms a 3:3 hetero-hexamer in an alternating pattern [1]. The MCM8/MCM9 complex is dispensable for DNA replication and S phase progression [2].	Domain
A, B	PF17207	MCM OB domain (MCM_OB)	MCM OB domain	This family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	DNA helicase MCM9	protein-containing complex binding binding MutSalpha complex binding mismatch repair complex binding MutSbeta complex binding chromatin binding ATP-dependent activity, acting on DNA nucleic acid conformation isomerase activity isomerase activity DNA helicase activity catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid helicase activity catalytic activity protein-containing complex binding binding MutSalpha complex binding mismatch repair complex binding MutSbeta complex binding chromatin binding ATP-dependent activity, acting on DNA nucleic acid conformation isomerase activity isomerase activity DNA helicase activity catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid helicase activity catalytic activity macromolecular conformation isomerase activity ATP-dependent activity adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides 3'-5' DNA helicase activity MutLbeta complex binding protein binding enzyme binding DNA binding single-stranded DNA binding nucleic acid binding	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process localization protein localization to chromatin protein localization to chromosome protein localization to organelle macromolecule localization intracellular protein localization sexual reproduction reproductive process cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process localization protein localization to chromatin protein localization to chromosome protein localization to organelle macromolecule localization intracellular protein localization sexual reproduction reproductive process multicellular organismal reproductive process female gamete generation gamete generation mismatch repair DNA-templated DNA replication DNA-templated DNA replication maintenance of fidelity primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process mismatch repair involved in maintenance of fidelity involved in DNA-dependent DNA replication DNA replication metabolic process macromolecule metabolic process DNA repair DNA recombination recombinational interstrand cross-link repair recombinational repair interstrand cross-link repair double-strand break repair double-strand break repair via homologous recombination	protein-containing complex MCM complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle chromosome MCM8-MCM9 complex membrane-bounded organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR031327	Mini-chromosome maintenance protein	Family
A, B	IPR058768	MCM9, N-terminal domain	Domain
A, B	IPR003593	AAA+ ATPase domain	Domain
A, B	IPR001208	MCM domain	Domain
A, B	IPR041562	MCM, AAA-lid domain	Domain
A, B	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A, B	IPR033762	MCM OB domain	Domain
A, B	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: Q9NXL9	46,XX ovarian dysgenesis-short stature syndrome intellectual disability osteosarcoma adenoma lung cancer ovarian cancer breast cancer medulloblastoma premature ovarian failure 1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.