Annotations: 7DOV

The crystal structure of zebrafish tumor necrosis factor alpha

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Ion_trans, Ion_trans_2	e7dovA1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: CNF1/YfiH-like putative cysteine hydrolases	T: CNF1/YfiH-like putative cysteine hydrolases	F: Ion_trans, Ion_trans_2	ECOD (v295)
B	Ion_trans, Ion_trans_2	e7dovB1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: CNF1/YfiH-like putative cysteine hydrolases	T: CNF1/YfiH-like putative cysteine hydrolases	F: Ion_trans, Ion_trans_2	ECOD (v295)
C	Ion_trans, Ion_trans_2	e7dovC1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: CNF1/YfiH-like putative cysteine hydrolases	T: CNF1/YfiH-like putative cysteine hydrolases	F: Ion_trans, Ion_trans_2	ECOD (v295)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	Lymphotoxin-alpha	molecular function activator activity molecular function regulator activity signaling receptor regulator activity receptor ligand activity signaling receptor activator activity cytokine activity protein binding binding signaling receptor binding cytokine receptor binding tumor necrosis factor receptor superfamily binding tumor necrosis factor receptor binding	developmental process multicellular organism development multicellular organismal process hepaticobiliary system development gland development animal organ development anatomical structure development liver development animal gross anatomical part developmental process system development response to stimulus immune response immune system process regeneration developmental process multicellular organism development multicellular organismal process hepaticobiliary system development gland development animal organ development anatomical structure development liver development animal gross anatomical part developmental process system development response to stimulus immune response immune system process regeneration fin regeneration tissue regeneration developmental growth growth catabolic process autophagy cellular process metabolic process process utilizing autophagic mechanism response to chemical response to dsRNA response to nitrogen compound response to exogenous dsRNA peripheral nervous system axon ensheathment nervous system development axon ensheathment ensheathment of neurons defense response to bacterium biological process involved in interspecies interaction between organisms response to other organism defense response response to bacterium response to stress response to external stimulus response to external biotic stimulus response to biotic stimulus regulation of cellular process cellular developmental process regulation of developmental process positive regulation of biological process cell development regulation of cell differentiation positive regulation of developmental process positive regulation of cell differentiation cell differentiation regulation of stem cell differentiation hematopoietic stem cell differentiation regulation of hematopoietic progenitor cell differentiation positive regulation of hematopoietic progenitor cell differentiation positive regulation of cellular process regulation of biological process positive regulation of hematopoietic stem cell differentiation hemopoiesis biological regulation regulation of hematopoietic stem cell differentiation positive regulation of stem cell differentiation stem cell differentiation hematopoietic progenitor cell differentiation response to virus system process epithelial structure maintenance homeostatic process digestive system process intestinal epithelial structure maintenance tissue homeostasis maintenance of gastrointestinal epithelium digestion multicellular organismal-level homeostasis anatomical structure homeostasis inflammatory response protein-containing complex organization protein trimerization cellular component organization cellular component biogenesis cellular component assembly protein homotrimerization protein complex oligomerization protein-containing complex assembly protein homooligomerization cellular component organization or biogenesis response to arsenic-containing substance response to lipid response to oxygen-containing compound response to lipopolysaccharide response to molecule of bacterial origin	cellular anatomical structure membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR008983	Tumour necrosis factor-like domain superfamily	Homologous Superfamily
A, B, C	IPR006052	Tumour necrosis factor domain	Domain
A, B, C	IPR006053	Tumour necrosis factor	Family
A, B, C	IPR002960	Lymphotoxin-alpha	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

7DOV | pdb_00007dov

The crystal structure of zebrafish tumor necrosis factor alpha

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage