7DLX | pdb_00007dlx

crystal structure of H2AM4>Z-H2B

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d7dlxa1	All alpha proteins	Histone-fold	Histone-fold	Nucleosome core histones	automated matches	Baker's yeast (Saccharomyces cerevisiae RM11-1a ) [TaxId: 285006 ], Baker's yeast (Saccharomyces cerevisiae RM11-1a ) [TaxId: 285006 ],	SCOPe (2.08)
B	d7dlxb1	All alpha proteins	Histone-fold	Histone-fold	Nucleosome core histones	automated matches	Baker's yeast (Saccharomyces cerevisiae RM11-1a ) [TaxId: 285006 ], Baker's yeast (Saccharomyces cerevisiae RM11-1a ) [TaxId: 285006 ],	SCOPe (2.08)
D	d7dlxd1	All alpha proteins	Histone-fold	Histone-fold	Nucleosome core histones	automated matches	Baker's yeast (Saccharomyces cerevisiae RM11-1a ) [TaxId: 285006 ], Baker's yeast (Saccharomyces cerevisiae RM11-1a ) [TaxId: 285006 ],	SCOPe (2.08)
G	d7dlxg1	All alpha proteins	Histone-fold	Histone-fold	Nucleosome core histones	automated matches	Baker's yeast (Saccharomyces cerevisiae RM11-1a ) [TaxId: 285006 ], Baker's yeast (Saccharomyces cerevisiae RM11-1a ) [TaxId: 285006 ],	SCOPe (2.08)
H	d7dlxh1	All alpha proteins	Histone-fold	Histone-fold	Nucleosome core histones	automated matches	Baker's yeast (Saccharomyces cerevisiae RM11-1a ) [TaxId: 285006 ], Baker's yeast (Saccharomyces cerevisiae RM11-1a ) [TaxId: 285006 ],	SCOPe (2.08)
F	d7dlxf1	All alpha proteins	Histone-fold	Histone-fold	Nucleosome core histones	automated matches	Baker's yeast (Saccharomyces cerevisiae RM11-1a ) [TaxId: 285006 ], Baker's yeast (Saccharomyces cerevisiae RM11-1a ) [TaxId: 285006 ],	SCOPe (2.08)
E	d7dlxe1	All alpha proteins	Histone-fold	Histone-fold	Nucleosome core histones	automated matches	Baker's yeast (Saccharomyces cerevisiae RM11-1a ) [TaxId: 285006 ], Baker's yeast (Saccharomyces cerevisiae RM11-1a ) [TaxId: 285006 ],	SCOPe (2.08)
C	d7dlxc1	All alpha proteins	Histone-fold	Histone-fold	Nucleosome core histones	automated matches	Baker's yeast (Saccharomyces cerevisiae RM11-1a ) [TaxId: 285006 ], Baker's yeast (Saccharomyces cerevisiae RM11-1a ) [TaxId: 285006 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Core histone-like	8103853	3001387	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Core histone-like	8103853	3001387	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Core histone-like	8103853	3001387	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Core histone-like	8103853	3001387	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Core histone-like	8103853	3001387	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Core histone-like	8103853	3001387	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Core histone-like	8103853	3001387	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Core histone-like	8103853	3001387	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Histone_1	e7dlxA2	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: Histone_1	ECOD (1.6)
A	Histone	e7dlxA1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: Histone	ECOD (1.6)
B	Histone_1	e7dlxB1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: Histone_1	ECOD (1.6)
B	Histone	e7dlxB2	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: Histone	ECOD (1.6)
D	Histone_1	e7dlxD2	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: Histone_1	ECOD (1.6)
D	Histone	e7dlxD1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: Histone	ECOD (1.6)
G	Histone_1	e7dlxG1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: Histone_1	ECOD (1.6)
G	Histone	e7dlxG2	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: Histone	ECOD (1.6)
H	Histone_1	e7dlxH2	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: Histone_1	ECOD (1.6)
H	Histone	e7dlxH1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: Histone	ECOD (1.6)
F	Histone_1	e7dlxF1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: Histone_1	ECOD (1.6)
F	Histone	e7dlxF2	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: Histone	ECOD (1.6)
E	Histone_1	e7dlxE2	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: Histone_1	ECOD (1.6)
E	Histone	e7dlxE1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: Histone	ECOD (1.6)
C	Histone_1	e7dlxC2	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: Histone_1	ECOD (1.6)
C	Histone	e7dlxC1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: Histone	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF16211	C-terminus of histone H2A (Histone_H2A_C)	C-terminus of histone H2A	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Histone H2B,Histone H2A	DNA binding binding nucleic acid binding protein heterodimerization activity protein binding protein dimerization activity structural molecule activity structural constituent of chromatin	regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process cellular process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process negative regulation of biological process negative regulation of RNA biosynthetic process transcription by RNA polymerase II negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process negative regulation of macromolecule metabolic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of metabolic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of RNA metabolic process cellular response to stimulus response to stimulus DNA metabolic process DNA damage tolerance DNA replication cellular response to stress DNA damage response response to stress cellular component organization chromatin organization cellular component organization or biogenesis DNA repair cellular component biogenesis cellular component assembly chromatin remodeling heterochromatin formation epigenetic regulation of gene expression heterochromatin organization negative regulation of gene expression negative regulation of gene expression, epigenetic	protein-containing complex intracellular anatomical structure protein-DNA complex nucleosome intracellular membraneless organelle chromatin chromosome intracellular organelle cellular anatomical structure organelle membraneless organelle membrane-bounded organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR009072	Histone-fold	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR000558	Histone H2B	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR007125	Core Histone H2A/H2B/H3 domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR055333	Histone H2B, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G, H	IPR009072	Histone-fold	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR002119	Histone H2A	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR007125	Core Histone H2A/H2B/H3 domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR032454	Histone H2A, C-terminal domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR032458	Histone H2A conserved site	Conserved Site

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.