7DL8 | pdb_00007dl8

Crystal structure of ALBA1 from Trypanosoma brucei

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C	d7dl8c_	Alpha and beta proteins (a+b)	IF3-like	AlbA-like	automated matches	automated matches	(Trypanosoma brucei ) [TaxId: 5691 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	MCM_OB	e7dl8A1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: MCM_OB	ECOD (v294.1)
B	MCM_OB	e7dl8B1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: MCM_OB	ECOD (v294.1)
C	PsbY	e7dl8C1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PsbY	ECOD (v294.1)
D	MCM_OB	e7dl8D1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: MCM_OB	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.110.20	Alpha Beta	2-Layer Sandwich	Translation Initiation Factor IF3	Alba-like domain	CATH (utative)
B	3.30.110.20	Alpha Beta	2-Layer Sandwich	Translation Initiation Factor IF3	Alba-like domain	CATH (utative)
C	3.30.110.20	Alpha Beta	2-Layer Sandwich	Translation Initiation Factor IF3	Alba-like domain	CATH (utative)
D	3.30.110.20	Alpha Beta	2-Layer Sandwich	Translation Initiation Factor IF3	Alba-like domain	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF01918	Alba (Alba)	Alba	Alba is a novel chromosomal protein that coats archaeal DNA without compacting it.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	ALBA-Domain Protein	RNA binding binding nucleic acid binding mRNA binding	-	intracellular anatomical structure cytoplasmic ribonucleoprotein granule intracellular membraneless organelle ribonucleoprotein granule intracellular organelle cellular anatomical structure organelle membraneless organelle cytoplasm supramolecular complex cytoplasmic stress granule membrane-bounded organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR036882	Alba-like domain superfamily	Homologous Superfamily
A, B, C, D	IPR014560	Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related	Family
A, B, C, D	IPR002775	DNA/RNA-binding protein Alba-like	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.