Annotations: 7D6D

Structural insights into membrane remodeling by SNX1

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
P	V-set	e7d6dP1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: V-set	ECOD (v295.2)
O	V-set	e7d6dO1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: V-set	ECOD (v295.2)
N	V-set	e7d6dN1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: V-set	ECOD (v295.2)
M	V-set	e7d6dM1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: V-set	ECOD (v295.2)
L	V-set	e7d6dL1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: V-set	ECOD (v295.2)
K	V-set	e7d6dK1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: V-set	ECOD (v295.2)
J	V-set	e7d6dJ1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: V-set	ECOD (v295.2)
I	V-set	e7d6dI1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: V-set	ECOD (v295.2)
H	V-set	e7d6dH1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: V-set	ECOD (v295.2)
G	V-set	e7d6dG1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: V-set	ECOD (v295.2)
F	V-set	e7d6dF1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: V-set	ECOD (v295.2)
E	V-set	e7d6dE1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: V-set	ECOD (v295.2)
D	V-set	e7d6dD1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: V-set	ECOD (v295.2)
C	V-set	e7d6dC1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: V-set	ECOD (v295.2)
B	V-set	e7d6dB1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: V-set	ECOD (v295.2)
A	DctP	e7d6dA1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: DctP	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	PF00787	PX domain (PX)	PX domain	PX domains bind to phosphoinositides.	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	PF09325	Vps5 C terminal like (Vps5)	Vps5 C terminal like	Vps5 is a sorting nexin that functions in membrane trafficking. This is the C terminal dimerisation domain [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	Sorting nexin-1	ion binding binding anion binding phosphatidylinositol binding small molecule binding protein heterodimerization activity protein binding protein dimerization activity transferrin receptor binding signaling receptor binding insulin receptor binding identical protein binding protein homodimerization activity leptin receptor binding ion binding binding anion binding phosphatidylinositol binding small molecule binding protein heterodimerization activity protein binding protein dimerization activity transferrin receptor binding signaling receptor binding insulin receptor binding identical protein binding protein homodimerization activity leptin receptor binding epidermal growth factor receptor binding growth factor receptor binding	early endosome to Golgi transport cellular localization transport intracellular transport establishment of localization vesicle-mediated transport endosomal transport localization cytosolic transport retrograde transport, endosome to Golgi establishment of localization in cell cellular process Golgi vesicle transport vesicle organization early endosome to Golgi transport cellular localization transport intracellular transport establishment of localization vesicle-mediated transport endosomal transport localization cytosolic transport retrograde transport, endosome to Golgi establishment of localization in cell cellular process Golgi vesicle transport vesicle organization cellular component organization membrane organization organelle organization membrane tubulation endosome membrane tubulation endosome organization cellular component organization or biogenesis endomembrane system organization import into cell receptor internalization receptor-mediated endocytosis endocytosis regulation of cellular process catabolic process positive regulation of protein metabolic process positive regulation of biological process macromolecule catabolic process regulation of primary metabolic process positive regulation of metabolic process positive regulation of macromolecule metabolic process protein metabolic process positive regulation of cellular process regulation of biological process regulation of protein metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process protein catabolic process regulation of catabolic process positive regulation of protein catabolic process positive regulation of catabolic process metabolic process macromolecule metabolic process regulation of metabolic process regulation of protein catabolic process establishment of protein localization protein transport macromolecule localization intracellular protein localization intracellular protein transport cellular response to stimulus negative regulation of transforming growth factor beta receptor signaling pathway cell surface receptor protein serine/threonine kinase signaling pathway cellular response to growth factor stimulus response to stimulus negative regulation of signaling signaling cellular response to transforming growth factor beta stimulus regulation of transmembrane receptor protein serine/threonine kinase signaling pathway negative regulation of biological process regulation of signal transduction negative regulation of cell communication cell communication regulation of transforming growth factor beta receptor signaling pathway cellular response to endogenous stimulus negative regulation of cellular process signal transduction enzyme-linked receptor protein signaling pathway regulation of signaling cell surface receptor signaling pathway negative regulation of response to stimulus regulation of cellular response to transforming growth factor beta stimulus response to endogenous stimulus regulation of cellular response to growth factor stimulus negative regulation of signal transduction response to transforming growth factor beta regulation of response to stimulus transforming growth factor beta receptor signaling pathway regulation of cell communication response to growth factor transforming growth factor beta receptor superfamily signaling pathway negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway developmental process plasma membrane bounded cell projection organization cell projection organization plasma membrane bounded cell projection morphogenesis cell morphogenesis anatomical structure morphogenesis cell projection morphogenesis lamellipodium organization lamellipodium morphogenesis anatomical structure development multicellular organismal process cellular developmental process cell development neuron projection development nervous system development generation of neurons neurogenesis multicellular organism development neuron differentiation cell differentiation neuron development animal gross anatomical part developmental process system development	cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium protein-containing complex membrane membrane protein complex retromer complex endomembrane system membrane-bounded organelle organelle vesicle endosome membrane cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium protein-containing complex membrane membrane protein complex retromer complex endomembrane system membrane-bounded organelle organelle vesicle endosome membrane intracellular anatomical structure synapse intracellular vesicle extrinsic component of organelle membrane extrinsic component of endosome membrane postsynaptic endosome intracellular organelle bounding membrane of organelle vesicle membrane cytoplasmic vesicle cell junction endosome intracellular membrane-bounded organelle postsynapse cytoplasmic vesicle membrane postsynaptic endosome membrane cytoplasm organelle membrane extrinsic component of membrane extrinsic component of postsynaptic endosome membrane cytosol presynapse retromer, tubulation complex lytic vacuole vacuole lysosome early endosome Golgi apparatus early endosome membrane neuron spine neuron projection dendritic spine somatodendritic compartment dendrite dendritic tree postsynaptic density neuron to neuron synapse postsynaptic specialization asymmetric synapse perinuclear region of cytoplasm postsynaptic density, intracellular component intracellular membraneless organelle postsynaptic specialization, intracellular component membraneless organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR001683	Phox homology	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR028660	Sorting nexin-1, BAR domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR027267	AH/BAR domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR015404	Sorting nexin/Vps5-like, C-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR034901	Sorting Nexin 1, PX domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR005329	Sorting nexin, N-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR036871	PX domain superfamily	Homologous Superfamily

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	mpstruc	MONOTOPIC MEMBRANE PROTEINS	Membrane-Shaping Proteins (monotopic)	sorting nexin (SNX) protein SNX1, helical array

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.