7D66 | pdb_00007d66

Crystal structure of retroviral protease-like domain of Ddi1 from Toxoplasma gondii

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L [auth K]	SCOP2B Superfamily	Acid proteases	8106643	3001059	SCOP2B (2022-06-29)
K [auth L]	SCOP2B Superfamily	Acid proteases	8106643	3001059	SCOP2B (2022-06-29)
J [auth I]	SCOP2B Superfamily	Acid proteases	8106643	3001059	SCOP2B (2022-06-29)
I [auth J]	SCOP2B Superfamily	Acid proteases	8106643	3001059	SCOP2B (2022-06-29)
H [auth G]	SCOP2B Superfamily	Acid proteases	8106643	3001059	SCOP2B (2022-06-29)
G [auth H]	SCOP2B Superfamily	Acid proteases	8106643	3001059	SCOP2B (2022-06-29)
F [auth E]	SCOP2B Superfamily	Acid proteases	8106643	3001059	SCOP2B (2022-06-29)
E [auth F]	SCOP2B Superfamily	Acid proteases	8106643	3001059	SCOP2B (2022-06-29)
D [auth C]	SCOP2 Family	Dimeric aspartyl proteases	8106642	4004443	SCOP2 (2022-06-29)
D [auth C]	SCOP2 Superfamily	Acid proteases	8106643	3001059	SCOP2 (2022-06-29)
C [auth D]	SCOP2B Superfamily	Acid proteases	8106643	3001059	SCOP2B (2022-06-29)
B [auth A]	SCOP2B Superfamily	Acid proteases	8106643	3001059	SCOP2B (2022-06-29)
A [auth B]	SCOP2B Superfamily	Acid proteases	8106643	3001059	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L [auth K]	UCR_UQCRX_QCR9	e7d66K1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v294.1)
K [auth L]	UCR_UQCRX_QCR9	e7d66L1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v294.1)
J [auth I]	UCR_UQCRX_QCR9	e7d66I1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v294.1)
I [auth J]	UCR_UQCRX_QCR9	e7d66J1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v294.1)
H [auth G]	UCR_UQCRX_QCR9	e7d66G1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v294.1)
G [auth H]	UCR_UQCRX_QCR9	e7d66H1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v294.1)
F [auth E]	UCR_UQCRX_QCR9	e7d66E1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v294.1)
E [auth F]	UCR_UQCRX_QCR9	e7d66F1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v294.1)
D [auth C]	Sybindin	e7d66C1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Sybindin	ECOD (v294.1)
C [auth D]	UCR_UQCRX_QCR9	e7d66D1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v294.1)
B [auth A]	UCR_UQCRX_QCR9	e7d66A1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v294.1)
A [auth B]	UCR_UQCRX_QCR9	e7d66B1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UCR_UQCRX_QCR9	ECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B], B [auth A], C [auth D], D [auth C], E [auth F], A [auth B], B [auth A], C [auth D], D [auth C], E [auth F], F [auth E], G [auth H], H [auth G], I [auth J], J [auth I], K [auth L], L [auth K]	Ubiquitin family protein	aspartic-type peptidase activity peptidase activity catalytic activity, acting on a protein hydrolase activity aspartic-type endopeptidase activity catalytic activity endopeptidase activity	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], B [auth A], C [auth D], D [auth C], E [auth F], A [auth B], B [auth A], C [auth D], D [auth C], E [auth F], F [auth E], G [auth H], H [auth G], I [auth J], J [auth I], K [auth L], L [auth K]	IPR033882	DNA damage inducible protein 1 ubiquitin-like domain	Domain
A [auth B], B [auth A], C [auth D], D [auth C], E [auth F], A [auth B], B [auth A], C [auth D], D [auth C], E [auth F], F [auth E], G [auth H], H [auth G], I [auth J], J [auth I], K [auth L], L [auth K]	IPR021109	Aspartic peptidase domain superfamily	Homologous Superfamily
A [auth B], B [auth A], C [auth D], D [auth C], E [auth F], A [auth B], B [auth A], C [auth D], D [auth C], E [auth F], F [auth E], G [auth H], H [auth G], I [auth J], J [auth I], K [auth L], L [auth K]	IPR029071	Ubiquitin-like domain superfamily	Homologous Superfamily
A [auth B], B [auth A], C [auth D], D [auth C], E [auth F], A [auth B], B [auth A], C [auth D], D [auth C], E [auth F], F [auth E], G [auth H], H [auth G], I [auth J], J [auth I], K [auth L], L [auth K]	IPR009060	UBA-like superfamily	Homologous Superfamily
A [auth B], B [auth A], C [auth D], D [auth C], E [auth F], A [auth B], B [auth A], C [auth D], D [auth C], E [auth F], F [auth E], G [auth H], H [auth G], I [auth J], J [auth I], K [auth L], L [auth K]	IPR000626	Ubiquitin-like domain	Domain
A [auth B], B [auth A], C [auth D], D [auth C], E [auth F], A [auth B], B [auth A], C [auth D], D [auth C], E [auth F], F [auth E], G [auth H], H [auth G], I [auth J], J [auth I], K [auth L], L [auth K]	IPR019103	Aspartic peptidase, DDI1-type	Domain
A [auth B], B [auth A], C [auth D], D [auth C], E [auth F], A [auth B], B [auth A], C [auth D], D [auth C], E [auth F], F [auth E], G [auth H], H [auth G], I [auth J], J [auth I], K [auth L], L [auth K]	IPR015940	Ubiquitin-associated domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.