7D63 | pdb_00007d63

Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
G [auth SH]SCOP2B SuperfamilyGS N-terminal domain-like 8053173 3000408 SCOP2B (2022-06-29)
F [auth SG]SCOP2B SuperfamilyRibosomal protein S7 8065993 3000799 SCOP2B (2022-06-29)
CB [auth RH]SCOP2B Superfamilyalpha/beta knot 8037153 3001122 SCOP2B (2022-06-29)
BB [auth RG]SCOP2B Superfamilyalpha/beta knot 8037153 3001122 SCOP2B (2022-06-29)
AB [auth RF]SCOP2B SuperfamilyRNA-binding domain, RBD 8053724 3000110 SCOP2B (2022-06-29)
AB [auth RF]SCOP2B SuperfamilyRRP7 C-terminal domain-like 8053722 3002219 SCOP2B (2022-06-29)
ZA [auth RE]SCOP2B SuperfamilyNucleotidyltransferase-like 8053725 3000129 SCOP2B (2022-06-29)
ZA [auth RE]SCOP2B SuperfamilyNucleotidyltransferase-like 8053726 3000129 SCOP2B (2022-06-29)
ZA [auth RE]SCOP2B SuperfamilyPAP/OAS1 substrate-binding domain-like 8053728 3000941 SCOP2B (2022-06-29)
ZA [auth RE]SCOP2B SuperfamilyPAP/OAS1 substrate-binding domain-like 8053727 3000941 SCOP2B (2022-06-29)
ZA [auth RE]SCOP2B SuperfamilyPAP/Archaeal CCA-adding enzyme C-terminal domain-like 8053729 3001147 SCOP2B (2022-06-29)
ZA [auth RE]SCOP2B SuperfamilyPAP/Archaeal CCA-adding enzyme C-terminal domain-like 8053730 3001147 SCOP2B (2022-06-29)
E [auth SF]SCOP2B SuperfamilyNucleic acid-binding proteins 8052759 3000135 SCOP2B (2022-06-29)
E [auth SF]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8052760 3000334 SCOP2B (2022-06-29)
E [auth SF]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8052758 3001473 SCOP2B (2022-06-29)
D [auth SC]SCOP2B SuperfamilyRibosomal S3Ae-like 8053211 3002166 SCOP2B (2022-06-29)
JA [auth B3]SCOP2B SuperfamilyUTPB complex component-like 8061270 3002330 SCOP2B (2022-06-29)
Z [auth 3H]SCOP2B SuperfamilyL30e-like 8033484 3001739 SCOP2B (2022-06-29)
Y [auth 3G]SCOP2B SuperfamilyL30e-like 8033484 3001739 SCOP2B (2022-06-29)
U [auth 3C]SCOP2B SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases 8063662 3000118 SCOP2B (2022-06-29)
T [auth 3B]SCOP2B SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases 8063662 3000118 SCOP2B (2022-06-29)
S [auth Sd]SCOP2B SuperfamilyNucleic acid-binding proteins 8063430 3000135 SCOP2B (2022-06-29)
N [auth SR]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8103366 3000100 SCOP2B (2022-06-29)
M [auth SP]SCOP2B SuperfamilyTranslational machinery components 8095805 3000571 SCOP2B (2022-06-29)
L [auth SO]SCOP2B SuperfamilyS15/NS1 RNA-binding domain 8052974 3001284 SCOP2B (2022-06-29)
L [auth SO]SCOP2B SuperfamilyHomeodomain-like 8052973 3000001 SCOP2B (2022-06-29)
K [auth SM]SCOP2B SuperfamilyNucleic acid-binding proteins 8052738 3000135 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
I [auth SJ]Ion_trans, Ion_trans_2e7d63SJ1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Ion_trans, Ion_trans_2ECOD (v294.1)
H [auth SI]Ion_trans, Ion_trans_2e7d63SI1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Ion_trans, Ion_trans_2ECOD (v294.1)
G [auth SH]Ion_trans, Ion_trans_2e7d63SH1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Ion_trans, Ion_trans_2ECOD (v294.1)
SB [auth RZ]Glyco_transf_41e7d63RZ1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Glyco_transf_41ECOD (v294.1)
RB [auth RD]Ion_trans, Ion_trans_2e7d63RD1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Ion_trans, Ion_trans_2ECOD (v294.1)
QB [auth SU]Ion_trans, Ion_trans_2e7d63SU1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Ion_trans, Ion_trans_2ECOD (v294.1)
PB [auth ST]Ion_trans, Ion_trans_2e7d63ST1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Ion_trans, Ion_trans_2ECOD (v294.1)
OB [auth RT]Glyco_transf_41e7d63RT1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Glyco_transf_41ECOD (v294.1)
LB [auth RS]Ion_trans, Ion_trans_2e7d63RS1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Ion_trans, Ion_trans_2ECOD (v294.1)
F [auth SG]Glyco_transf_41e7d63SG1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Glyco_transf_41ECOD (v294.1)
GB [auth RM]Glyco_transf_41e7d63RM1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Glyco_transf_41ECOD (v294.1)
FB [auth RL]Glyco_transf_41e7d63RL1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Glyco_transf_41ECOD (v294.1)
EB [auth RK]Glyco_transf_41e7d63RK1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Glyco_transf_41ECOD (v294.1)
CB [auth RH]Ion_trans, Ion_trans_2e7d63RH1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Ion_trans, Ion_trans_2ECOD (v294.1)
BB [auth RG]Ion_trans, Ion_trans_2e7d63RG1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Ion_trans, Ion_trans_2ECOD (v294.1)
AB [auth RF]Glyco_transf_41e7d63RF1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Glyco_transf_41ECOD (v294.1)
ZA [auth RE]Ion_trans, Ion_trans_2e7d63RE1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Ion_trans, Ion_trans_2ECOD (v294.1)
E [auth SF]Glyco_transf_41e7d63SF1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Glyco_transf_41ECOD (v294.1)
XA [auth RA]Ion_trans, Ion_trans_2e7d63RA1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Ion_trans, Ion_trans_2ECOD (v294.1)
SA [auth 5G]Glyco_transf_41e7d635G1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Glyco_transf_41ECOD (v294.1)
RA [auth 5F]Ion_trans, Ion_trans_2e7d635F1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Ion_trans, Ion_trans_2ECOD (v294.1)
D [auth SC]Ion_trans, Ion_trans_2e7d63SC1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Ion_trans, Ion_trans_2ECOD (v294.1)
OA [auth 5C]AAAe7d635C1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: AAAECOD (v294.1)
LA [auth BE]Glyco_transf_41e7d63BE1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Glyco_transf_41ECOD (v294.1)
JA [auth B3]Ion_trans, Ion_trans_2e7d63B31 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Ion_trans, Ion_trans_2ECOD (v294.1)
IA [auth B2]Glyco_transf_41e7d63B21 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Glyco_transf_41ECOD (v294.1)
HA [auth B1]Glyco_transf_41e7d63B11 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Glyco_transf_41ECOD (v294.1)
FA [auth AF]Ion_trans, Ion_trans_2e7d63AF1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Ion_trans, Ion_trans_2ECOD (v294.1)
DA [auth A9]Ion_trans, Ion_trans_2e7d63A91 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Ion_trans, Ion_trans_2ECOD (v294.1)
AA [auth A4]Glyco_transf_41e7d63A41 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Glyco_transf_41ECOD (v294.1)
Z [auth 3H]Ion_trans, Ion_trans_2e7d633H1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Ion_trans, Ion_trans_2ECOD (v294.1)
Y [auth 3G]Ion_trans, Ion_trans_2e7d633G1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Ion_trans, Ion_trans_2ECOD (v294.1)
X [auth 3F]Ion_trans, Ion_trans_2e7d633F1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Ion_trans, Ion_trans_2ECOD (v294.1)
V [auth 3D]Ion_trans, Ion_trans_2e7d633D1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Ion_trans, Ion_trans_2ECOD (v294.1)
U [auth 3C]Ion_trans, Ion_trans_2e7d633C1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Ion_trans, Ion_trans_2ECOD (v294.1)
T [auth 3B]Ion_trans, Ion_trans_2e7d633B1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Ion_trans, Ion_trans_2ECOD (v294.1)
S [auth Sd]Ion_trans, Ion_trans_2e7d63Sd1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Ion_trans, Ion_trans_2ECOD (v294.1)
R [auth Sc]Glyco_transf_41e7d63Sc1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Glyco_transf_41ECOD (v294.1)
Q [auth SZ]Ion_trans, Ion_trans_2e7d63SZ1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Ion_trans, Ion_trans_2ECOD (v294.1)
P [auth SY]Ion_trans, Ion_trans_2e7d63SY1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Ion_trans, Ion_trans_2ECOD (v294.1)
O [auth SX]Ion_trans, Ion_trans_2e7d63SX1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Ion_trans, Ion_trans_2ECOD (v294.1)
N [auth SR]Ion_trans, Ion_trans_2e7d63SR1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Ion_trans, Ion_trans_2ECOD (v294.1)
M [auth SP]Ion_trans, Ion_trans_2e7d63SP1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Ion_trans, Ion_trans_2ECOD (v294.1)
L [auth SO]Ion_trans, Ion_trans_2e7d63SO1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Ion_trans, Ion_trans_2ECOD (v294.1)
K [auth SM]Glyco_transf_41e7d63SM1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Glyco_transf_41ECOD (v294.1)
J [auth SK]Ion_trans, Ion_trans_2e7d63SK1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Ion_trans, Ion_trans_2ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
I [auth SJ]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
G [auth SH]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
SB [auth RZ]PF04408Helicase associated domain (HA2), winged-helix (WHD_HA2)Helicase associated domain (HA2), winged-helixThe helicase associated domain (HA2) has an all alpha-helical fold and consists of a N-terminal winged-helix (WH) domain and a C-terminal degenerate helical-bundle domain, referred to as the ratchet-like domain [1,2,3]. These domains collaborate wit ...The helicase associated domain (HA2) has an all alpha-helical fold and consists of a N-terminal winged-helix (WH) domain and a C-terminal degenerate helical-bundle domain, referred to as the ratchet-like domain [1,2,3]. These domains collaborate with RecA domains at the N-terminal in completing an RNA binding channel to allow the helicases to keep a stable grip on the RNA [3] and assure its correct function. This entry represents the WH domain, which connects the N- (RecA domains) and C-terminal domains (ratchet-like and OB-fold) of helicases.
Domain
SB [auth RZ]PF07717Oligonucleotide/oligosaccharide-binding (OB)-fold (OB_NTP_bind)Oligonucleotide/oligosaccharide-binding (OB)-foldThis family is found towards the C-terminus of the DEAD-box helicases (Pfam:PF00270). In these helicases it is apparently always found in association with Pfam:PF04408. There do seem to be a couple of instances where it occurs by itself - e.g. Swiss: ...This family is found towards the C-terminus of the DEAD-box helicases (Pfam:PF00270). In these helicases it is apparently always found in association with Pfam:PF04408. There do seem to be a couple of instances where it occurs by itself - e.g. Swiss:Q84VZ2. The structure PDB:3i4u adopts an OB-fold. helicases (Pfam:PF00270). In these helicases it is apparently always found in association with Pfam:PF04408. This C-terminal domain of the yeast helicase contains an oligonucleotide/oligosaccharide-binding (OB)-fold which seems to be placed at the entrance of the putative nucleic acid cavity. It also constitutes the binding site for the G-patch-containing domain of Pfa1p. When found on DEAH/RHA helicases, this domain is central to the regulation of the helicase activity through its binding of both RNA and G-patch domain proteins [1].
Domain
SB [auth RZ]PF00270DEAD/DEAH box helicase (DEAD)DEAD/DEAH box helicaseMembers of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome ...Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Domain
SB [auth RZ]PF00271Helicase conserved C-terminal domain (Helicase_C)Helicase conserved C-terminal domainThe Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Domain
SB [auth RZ]PF21010Helicase associated domain (HA2), ratchet-like (HA2_C)Helicase associated domain (HA2), ratchet-likeThe helicase associated domain (HA2) has an all alpha-helical fold and consists of a N-terminal winged-helix (WH) domain (Pfam:PF04408) and a C-terminal degenerate helical-bundle domain, referred to as the ratchet-like domain [1,2,3]. These domains c ...The helicase associated domain (HA2) has an all alpha-helical fold and consists of a N-terminal winged-helix (WH) domain (Pfam:PF04408) and a C-terminal degenerate helical-bundle domain, referred to as the ratchet-like domain [1,2,3]. These domains collaborate with the RecA domains at the N-terminal in completing an RNA binding channel to allow the helicases to keep a stable grip on the RNA [3]. This entry represents the ratchet-like domain, which may be important for RNA translocation [1,2].
Domain
RB [auth RD]PF23240PRP39 N-terminal HAT repeat (HAT_PRP39_N)PRP39 N-terminal HAT repeat- Repeat
RB [auth RD]PF00575S1 RNA binding domain (S1)S1 RNA binding domainThe S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure. Domain
QB [auth SU]PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
PB [auth ST]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
F [auth SG]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Domain
JB [auth RP]PF23099Small subunit processome component 20 homolog, C-terminal (UTP20_C)Small subunit processome component 20 homolog, C-terminal- Repeat
JB [auth RP]PF07539U3 small nucleolar RNA-associated protein 20, N-terminal (UTP20_N)U3 small nucleolar RNA-associated protein 20, N-terminal- Repeat
IB [auth RO]PF03914CBF/Mak21 family (CBF)CBF/Mak21 family- Repeat
HB [auth RN]PF04147Nop14-like family (Nop14)Nop14-like family- Family
FB [auth RL],
GB [auth RM]		PF13725Possible tRNA binding domain (tRNA_bind_2)Possible tRNA binding domain- Family
FB [auth RL],
GB [auth RM]		PF13718GNAT acetyltransferase 2 (GNAT_acetyltr_2)GNAT acetyltransferase 2- Family
FB [auth RL],
GB [auth RM]		PF05127RNA cytidine acetyltransferase NAT10/TcmA, helicase domain (NAT10_TcmA_helicase)RNA cytidine acetyltransferase NAT10/TcmA, helicase domainThis domain contains a P-loop (Walker A) motif, suggesting that it has ATPase activity, and a Walker B motif. It si found in RNA cytidine acetyltransferase NAT10 from eukaryotes and tRNA(Met) cytidine acetyltransferase TcmA from prokaryotes. NAT10 ca ...This domain contains a P-loop (Walker A) motif, suggesting that it has ATPase activity, and a Walker B motif. It si found in RNA cytidine acetyltransferase NAT10 from eukaryotes and tRNA(Met) cytidine acetyltransferase TcmA from prokaryotes. NAT10 catalyses the formation of N4-acetylcytidine (ac4C) modification on mRNAs, 18S rRNA and tRNAs [1-4]. In tRNA(Met) cytidine acetyltransferase (TmcA) it may function as an RNA helicase motor (driven by ATP hydrolysis) which delivers the wobble base to the active centre of the GCN5-related N-acetyltransferase (GNAT) domain [1].
Domain
EB [auth RK]PF05189RNA 3'-terminal phosphate cyclase (RTC), insert domain (RTC_insert)RNA 3'-terminal phosphate cyclase (RTC), insert domainRNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation o ...RNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation of the covalent AMP-cyclase intermediate [1]. The structure of RTC demonstrates that RTCs are comprised two domain. The larger domain contains an insert domain of approximately 100 amino acids [1].
Domain
EB [auth RK]PF01137RNA 3'-terminal phosphate cyclase (RTC)RNA 3'-terminal phosphate cyclaseRNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation o ...RNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation of the covalent AMP-cyclase intermediate [1]. The structure of RTC demonstrates that RTCs are comprised two domain. The larger domain contains an insert domain of approximately 100 amino acids [1].
Domain
DB [auth RJ]PF08142AARP2CN (NUC121) domain (AARP2CN)AARP2CN (NUC121) domainThis domain is the central domain of AARP2. It is weakly similar to the GTP-binding domain of elongation factor TU [1]. Domain
DB [auth RJ]PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
BB [auth RG],
CB [auth RH]		PF03587EMG1/NEP1 methyltransferase (EMG1)EMG1/NEP1 methyltransferase- Family
AB [auth RF]PF17799Rrp7 RRM-like N-terminal domain (RRM_Rrp7)Rrp7 RRM-like N-terminal domainThis domain corresponds to the N-terminal RNA-binding domain found in the Rrp7 protein. It has an RRM-like fold with a circular permutation [1]. Domain
AB [auth RF]PF12923Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain (RRP7)Ribosomal RNA-processing protein 7 (RRP7) C-terminal domainRRP7 is an essential protein in yeast that is involved in pre-rRNA processing and ribosome assembly [1]. It is speculated to be required for correct assembly of rpS27 into the pre-ribosomal particle [1-2]. Domain
ZA [auth RE]PF03813Nrap protein domain 1 (Nrap)Nrap protein domain 1Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1]. This domain has a nucleotidyltransferase structure.
Domain
ZA [auth RE]PF17403Nrap protein PAP/OAS-like domain (Nrap_D2)Nrap protein PAP/OAS-like domainMembers of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
ZA [auth RE]PF17406Nrap protein PAP/OAS1-like domain 5 (Nrap_D5)Nrap protein PAP/OAS1-like domain 5Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
ZA [auth RE]PF17407Nrap protein domain 6 (Nrap_D6)Nrap protein domain 6Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
ZA [auth RE]PF17404Nrap protein domain 3 (Nrap_D3)Nrap protein domain 3Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
ZA [auth RE]PF17405Nrap protein nucleotidyltransferase domain 4 (Nrap_D4)Nrap protein nucleotidyltransferase domain 4Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
E [auth SF]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
E [auth SF]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
E [auth SF]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
E [auth SF]PF00467KOW motif (KOW)KOW motif- Family
XA [auth RA]PF23098Nucleolar protein 10-like, N-terminal domain (Beta-prop_NOL10_N)Nucleolar protein 10-like, N-terminal domain- Repeat
WA [auth 5K]PF04900Fcf1 (Fcf1)Fcf1Fcf1 is a nucleolar protein involved in pre-rRNA processing [1]. Depletion of yeast Fcf1 and Fcf2 leads to a decrease in synthesis of the 18S rRNA and results in a deficit in 40S ribosomal subunits [1]. Domain
UA [auth 5I]PF04158Sof1-like domain (Sof1)Sof1-like domain- Family
UA [auth 5I]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
SA [auth 5G]PF04427Brix domain (Brix)Brix domainDomain
RA [auth 5F]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
RA [auth 5F]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
PA [auth 5D]PF03998Utp11 protein (Utp11)Utp11 protein- Family
D [auth SC]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
D [auth SC]PF01015Ribosomal S3Ae family (Ribosomal_S3Ae)Ribosomal S3Ae family- Family
OA [auth 5C]PF08149BING4CT (NUC141) domain (BING4CT)BING4CT (NUC141) domain- Repeat
OA [auth 5C]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
MA [auth B6]PF08640U3 small nucleolar RNA-associated protein 6 (U3_assoc_6)U3 small nucleolar RNA-associated protein 6- Repeat
MA [auth B6]PF23240PRP39 N-terminal HAT repeat (HAT_PRP39_N)PRP39 N-terminal HAT repeat- Repeat
LA [auth BE]PF04192Utp21 specific WD40 associated putative domain (Utp21)Utp21 specific WD40 associated putative domainUtp21 is a subunit of U3 snoRNP, which is essential for synthesis of 18S rRNA. Domain
LA [auth BE]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
KA [auth B8]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
JA [auth B3]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
JA [auth B3]PF08625Utp13 specific WD40 associated domain (Utp13)Utp13 specific WD40 associated domainUtp13 is a component of the five protein Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome [1]. Pwp2 is capable o ...Utp13 is a component of the five protein Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome [1]. Pwp2 is capable of interacting directly with the 35 S pre-rRNA 5' end [1].
Domain
IA [auth B2]PF04003Dip2/Utp12 Family (Utp12)Dip2/Utp12 Family- Family
IA [auth B2]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
HA [auth B1]PF04003Dip2/Utp12 Family (Utp12)Dip2/Utp12 Family- Family
HA [auth B1]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
GA [auth AG]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
FA [auth AF]PF09384UTP15 C terminal (UTP15_C)UTP15 C terminal- Family
FA [auth AF]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
EA [auth AE]PF08146BP28CT (NUC211) domain (BP28CT)BP28CT (NUC211) domainThis C terminal domain is found in BAP28-like nucleolar proteins [1]. Domain
EA [auth AE]PF23243HEATR1-like, HEAT repeats (HEAT_HEATR1)HEATR1-like, HEAT repeats- Repeat
EA [auth AE]PF12397U3 small nucleolar RNA-associated protein 10 (U3snoRNP10)U3 small nucleolar RNA-associated protein 10- Family
BA [auth A5]PF04003Dip2/Utp12 Family (Utp12)Dip2/Utp12 Family- Family
AA [auth A4]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
Y [auth 3G],
Z [auth 3H]		PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
X [auth 3F]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
W [auth 3E]PF08156NOP5NT (NUC127) domain (NOP5NT)NOP5NT (NUC127) domainThis N terminal domain is found in RNA-binding proteins of the NOP5 family [1]. Domain
W [auth 3E]PF01798snoRNA binding domain, fibrillarin (Nop)snoRNA binding domain, fibrillarin- Family
V [auth 3D]PF08156NOP5NT (NUC127) domain (NOP5NT)NOP5NT (NUC127) domainThis N terminal domain is found in RNA-binding proteins of the NOP5 family [1]. Domain
V [auth 3D]PF01798snoRNA binding domain, fibrillarin (Nop)snoRNA binding domain, fibrillarin- Family
T [auth 3B],
U [auth 3C]		PF01269Fibrillarin (Fibrillarin)FibrillarinDomain
Q [auth SZ]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
O [auth SX]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8Domain
N [auth SR]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
M [auth SP]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
L [auth SO]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15Domain
K [auth SM]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
K [auth SM]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
J [auth SK]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth SJ]40S ribosomal protein S8-A
H [auth SI]40S ribosomal protein S7-A
G [auth SH]40S ribosomal protein S6-A
SB [auth RZ]Probable ATP-dependent RNA helicase DHR1
RB [auth RD]rRNA biogenesis protein RRP5
QB [auth SU]40S ribosomal protein S19-A
PB [auth ST]40S ribosomal protein S18-A
OB [auth RT]Pno1---
NB [auth X1]Unassigned peptides 1---
MB [auth RY]Protein BFR2-
LB [auth RS]Essential nuclear protein 1
F [auth SG]40S ribosomal protein S5
KB [auth RQ]U3 small nucleolar RNA-associated protein 14
JB [auth RP]U3 small nucleolar RNA-associated protein 20
IB [auth RO]Nucleolar complex protein 4-
HB [auth RN]Nucleolar complex protein 14
FB [auth RL],
GB [auth RM]		RNA cytidine acetyltransferase
EB [auth RK]RNA 3'-terminal phosphate cyclase-like protein
DB [auth RJ]Ribosome biogenesis protein BMS1
BB [auth RG],
CB [auth RH]		Ribosomal RNA small subunit methyltransferase NEP1
AB [auth RF]Ribosomal RNA-processing protein 7
ZA [auth RE]U3 small nucleolar RNA-associated protein 22
E [auth SF]40S ribosomal protein S4-A
YA [auth RB]U3 small nucleolar ribonucleoprotein protein LCP5-
XA [auth RA]Ribosome biogenesis protein ENP2-
WA [auth 5K]rRNA-processing protein FCF1
VA [auth 5J]rRNA-processing protein FCF2-
UA [auth 5I]Protein SOF1
TA [auth 5H]Something about silencing protein 10
SA [auth 5G]U3 small nucleolar ribonucleoprotein protein IMP4
RA [auth 5F]U3 small nucleolar ribonucleoprotein protein IMP3
QA [auth 5E]U3 small nucleolar RNA-associated protein MPP10
PA [auth 5D]U3 small nucleolar RNA-associated protein 11-
D [auth SC]40S ribosomal protein S1-A
OA [auth 5C]U3 small nucleolar RNA-associated protein 7-
NA [auth 5B]Bud site selection protein 21
MA [auth B6]U3 small nucleolar RNA-associated protein 6
LA [auth BE]U3 small nucleolar RNA-associated protein 21-
KA [auth B8]U3 small nucleolar RNA-associated protein 18-
JA [auth B3]U3 small nucleolar RNA-associated protein 13
IA [auth B2]U3 small nucleolar RNA-associated protein 12
HA [auth B1]Periodic tryptophan protein 2
GA [auth AG]NET1-associated nuclear protein 1
FA [auth AF]U3 small nucleolar RNA-associated protein 15
C [auth SA]18S rRNA---
EA [auth AE]U3 small nucleolar RNA-associated protein 10
DA [auth A9]U3 small nucleolar RNA-associated protein 9
CA [auth A8]U3 small nucleolar RNA-associated protein 8
BA [auth A5]U3 small nucleolar RNA-associated protein 5-
AA [auth A4]U3 small nucleolar RNA-associated protein 4-
Y [auth 3G],
Z [auth 3H]		13 kDa ribonucleoprotein-associated protein
X [auth 3F]Ribosomal RNA-processing protein 9
W [auth 3E]Nucleolar protein 58
V [auth 3D]Nucleolar protein 56
T [auth 3B],
U [auth 3C]		rRNA 2'-O-methyltransferase fibrillarin
B [auth 5A]5' ETS---
S [auth Sd]40S ribosomal protein S28-A
R [auth Sc]40S ribosomal protein S27-A
Q [auth SZ]40S ribosomal protein S24-A
P [auth SY]40S ribosomal protein S23-A
O [auth SX]40S ribosomal protein S22-B
N [auth SR]40S ribosomal protein S16-A
M [auth SP]40S ribosomal protein S14-A
L [auth SO]40S ribosomal protein S13
K [auth SM]40S ribosomal protein S11-A
J [auth SK]40S ribosomal protein S9-A
A [auth 3A]U3 snoRNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth SJ]IPR001047Small ribosomal subunit protein eS8Family
I [auth SJ]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotaHomologous Superfamily
I [auth SJ]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
I [auth SJ]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
H [auth SI]IPR000554Small ribosomal subunit protein eS7Family
H [auth SI]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
G [auth SH]IPR014401Small ribosomal subunit protein eS6-likeFamily
G [auth SH]IPR001377Small ribosomal subunit protein eS6Family
G [auth SH]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
SB [auth RZ]IPR011709DEAD-box helicase, OB foldDomain
SB [auth RZ]IPR001650Helicase, C-terminal domain-likeDomain
SB [auth RZ]IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
SB [auth RZ]IPR048333Helicase associated domain (HA2), winged-helix domainDomain
SB [auth RZ]IPR002464DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved siteConserved Site
SB [auth RZ]IPR007502Helicase-associated domainDomain
SB [auth RZ]IPR011545DEAD/DEAH-box helicase domainDomain
SB [auth RZ]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
RB [auth RD]IPR048059rRNA biogenesis protein RRP5, S1 domain, first repeatDomain
RB [auth RD]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
RB [auth RD]IPR003029S1 domainDomain
RB [auth RD]IPR048058rRNA biogenesis protein RRP5, S1 domain, eleventh repeatDomain
RB [auth RD]IPR003107HAT (Half-A-TPR) repeatRepeat
RB [auth RD]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
RB [auth RD]IPR045209rRNA biogenesis protein Rrp5Family
QB [auth SU]IPR001266Small ribosomal subunit protein eS19Family
QB [auth SU]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
QB [auth SU]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
QB [auth SU]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
PB [auth ST]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
PB [auth ST]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
PB [auth ST]IPR001892Small ribosomal subunit protein uS13Family
PB [auth ST]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
MB [auth RY]IPR012617Apoptosis-antagonizing transcription factor, C-terminalDomain
MB [auth RY]IPR025160AATF leucine zipper-containing domainDomain
MB [auth RY]IPR039223Protein AATF/Bfr2Family
LB [auth RS]IPR007955BystinFamily
F [auth SG]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
F [auth SG]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
F [auth SG]IPR000235Small ribosomal subunit protein uS7Family
F [auth SG]IPR023798Small ribosomal subunit protein uS7 domainDomain
F [auth SG]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
KB [auth RQ]IPR006709Small-subunit processome, Utp14Family
JB [auth RP]IPR046523U3 small nucleolar RNA-associated protein 20 domainDomain
JB [auth RP]IPR016024Armadillo-type foldHomologous Superfamily
JB [auth RP]IPR011430U3 small nucleolar RNA-associated protein 20, N-terminalDomain
JB [auth RP]IPR011989Armadillo-like helicalHomologous Superfamily
JB [auth RP]IPR057525U3 small nucleolar RNA-associated protein 20, C-terminalDomain
JB [auth RP]IPR052575Small subunit processome component 20Family
IB [auth RO]IPR005612CCAAT-binding factorDomain
IB [auth RO]IPR027193Nucleolar complex protein 4-likeFamily
HB [auth RN]IPR007276Nucleolar protein 14Family
FB [auth RL],
GB [auth RM]		IPR007807TcmA/NAT10, helicase domainDomain
FB [auth RL],
GB [auth RM]		IPR027992Possible tRNA binding domainDomain
FB [auth RL],
GB [auth RM]		IPR013562TmcA/NAT10, N-terminalDomain
FB [auth RL],
GB [auth RM]		IPR032672TmcA/NAT10/Kre33Family
FB [auth RL],
GB [auth RM]		IPR033688RNA cytidine acetyltransferase NAT10Family
FB [auth RL],
GB [auth RM]		IPR000182GNAT domainDomain
FB [auth RL],
GB [auth RM]		IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
EB [auth RK]IPR013792RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/betaHomologous Superfamily
EB [auth RK]IPR023797RNA 3'-terminal phosphate cyclase domainDomain
EB [auth RK]IPR000228RNA 3'-terminal phosphate cyclaseFamily
EB [auth RK]IPR020719RNA 3'-terminal phosphate cyclase-like, conserved siteConserved Site
EB [auth RK]IPR037136RNA 3'-terminal phosphate cyclase domain superfamilyHomologous Superfamily
EB [auth RK]IPR016443RNA 3'-terminal phosphate cyclase type 2Family
EB [auth RK]IPR013791RNA 3'-terminal phosphate cyclase, insert domainDomain
EB [auth RK]IPR036553RNA 3'-terminal phosphate cyclase, insert domain superfamilyHomologous Superfamily
DB [auth RJ]IPR007034Ribosome biogenesis protein BMS1/TSR1, C-terminalDomain
DB [auth RJ]IPR039761Ribosome biogenesis protein Bms1/Tsr1Family
DB [auth RJ]IPR003959ATPase, AAA-type, coreDomain
DB [auth RJ]IPR012948AARP2CNDomain
DB [auth RJ]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
DB [auth RJ]IPR030387Bms1/Tsr1-type G domainDomain
DB [auth RJ]IPR037875Ribosome biogenesis protein Bms1, N-terminalDomain
BB [auth RG],
CB [auth RH]		IPR029026tRNA (guanine-N1-)-methyltransferase, N-terminalHomologous Superfamily
BB [auth RG],
CB [auth RH]		IPR005304Ribosomal biogenesis, methyltransferase, EMG1/NEP1Family
BB [auth RG],
CB [auth RH]		IPR029028Alpha/beta knot methyltransferasesHomologous Superfamily
AB [auth RF]IPR040446Ribosomal RNA-processing protein 7Family
AB [auth RF]IPR040447Rrp7, RRM-like N-terminal domainDomain
AB [auth RF]IPR024326Ribosomal RNA-processing protein 7, C-terminal domainDomain
ZA [auth RE]IPR035367Nrap protein, domain 2Domain
ZA [auth RE]IPR035368Nrap protein, domain 3Domain
ZA [auth RE]IPR035370Nrap protein, domain 5Domain
ZA [auth RE]IPR005554NOL6/Upt22Family
ZA [auth RE]IPR035369Nrap protein, domain 4Domain
ZA [auth RE]IPR035082Nrap protein domain 1Domain
ZA [auth RE]IPR035371Nrap protein, domain 6Domain
E [auth SF]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
E [auth SF]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
E [auth SF]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
E [auth SF]IPR002942RNA-binding S4 domainDomain
E [auth SF]IPR013845Small ribosomal subunit protein eS4, central regionDomain
E [auth SF]IPR000876Small ribosomal subunit protein eS4Family
E [auth SF]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
E [auth SF]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
E [auth SF]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
E [auth SF]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
E [auth SF]IPR005824KOWDomain
YA [auth RB]IPR007146Sas10/Utp3/C1DFamily
XA [auth RA]IPR001680WD40 repeatRepeat
XA [auth RA]IPR056550Nucleolar protein 10-like, second domainDomain
XA [auth RA]IPR040382Nucleolar protein 10/Enp2Family
XA [auth RA]IPR012580NUC153Domain
XA [auth RA]IPR056551Nucleolar protein 10-like, N-terminal domainDomain
XA [auth RA]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
XA [auth RA]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
WA [auth 5K]IPR002716PIN domainDomain
WA [auth 5K]IPR006984Fcf1/UTP23Family
WA [auth 5K]IPR029060PIN-like domain superfamilyHomologous Superfamily
WA [auth 5K]IPR037503rRNA-processing protein Fcf1, PIN domainDomain
VA [auth 5J]IPR039883Fcf2/DNTTIP2Family
VA [auth 5J]IPR014810Fcf2 pre-rRNA processing, C-terminalDomain
UA [auth 5I]IPR051733WD repeat-containing DCAF13/WDSOF1Family
UA [auth 5I]IPR007287Sof1-like proteinDomain
UA [auth 5I]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
UA [auth 5I]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
UA [auth 5I]IPR001680WD40 repeatRepeat
UA [auth 5I]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
TA [auth 5H]IPR018972Sas10 C-terminal domainDomain
TA [auth 5H]IPR007146Sas10/Utp3/C1DFamily
SA [auth 5G]IPR044281U3 snoRNP protein/Ribosome production factor 1Family
SA [auth 5G]IPR007109Brix domainDomain
RA [auth 5F]IPR002942RNA-binding S4 domainDomain
RA [auth 5F]IPR022801Small ribosomal subunit protein uS4Family
RA [auth 5F]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
RA [auth 5F]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
QA [auth 5E]IPR012173U3 small nucleolar ribonucleoprotein complex, subunit Mpp10Family
PA [auth 5D]IPR007144Small-subunit processome, Utp11Family
D [auth SC]IPR001593Small ribosomal subunit protein eS1Family
D [auth SC]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
D [auth SC]IPR027500Small ribosomal subunit protein eS1, eukaryotaFamily
OA [auth 5C]IPR019775WD40 repeat, conserved siteConserved Site
OA [auth 5C]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
OA [auth 5C]IPR012952BING4, C-terminal domainDomain
OA [auth 5C]IPR001680WD40 repeatRepeat
OA [auth 5C]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
OA [auth 5C]IPR040315WD repeat-containing protein WDR46/Utp7Family
NA [auth 5B]IPR013268U3 small nucleolar RNA-associated protein 16Family
MA [auth B6]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
MA [auth B6]IPR055347U3 small nucleolar RNA-associated protein 6, N-terminalDomain
MA [auth B6]IPR003107HAT (Half-A-TPR) repeatRepeat
MA [auth B6]IPR013949U3 small nucleolar RNA-associated protein 6Family
LA [auth BE]IPR019775WD40 repeat, conserved siteConserved Site
LA [auth BE]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
LA [auth BE]IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
LA [auth BE]IPR001680WD40 repeatRepeat
LA [auth BE]IPR007319WDR36/Utp21, C-terminal domainDomain
LA [auth BE]IPR059157WDR36/Utp21, N-terminal domainDomain
LA [auth BE]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
KA [auth B8]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
KA [auth B8]IPR001680WD40 repeatRepeat
KA [auth B8]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
KA [auth B8]IPR045161U3 small nucleolar RNA-associated protein 18Family
JA [auth B3]IPR019775WD40 repeat, conserved siteConserved Site
JA [auth B3]IPR013934U3 small nucleolar RNA-associated protein 13, C-terminalDomain
JA [auth B3]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
JA [auth B3]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
JA [auth B3]IPR001680WD40 repeatRepeat
JA [auth B3]IPR057644WD repeat-containing protein 75, second beta-propellerDomain
JA [auth B3]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IA [auth B2]IPR019775WD40 repeat, conserved siteConserved Site
IA [auth B2]IPR007148Small-subunit processome, Utp12Domain
IA [auth B2]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IA [auth B2]IPR051570TBC1 domain family involved in cilium biogenesisFamily
IA [auth B2]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
IA [auth B2]IPR001680WD40 repeatRepeat
IA [auth B2]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
HA [auth B1]IPR024977Anaphase-promoting complex subunit 4-like, WD40 domainDomain
HA [auth B1]IPR019775WD40 repeat, conserved siteConserved Site
HA [auth B1]IPR007148Small-subunit processome, Utp12Domain
HA [auth B1]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
HA [auth B1]IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
HA [auth B1]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
HA [auth B1]IPR001680WD40 repeatRepeat
HA [auth B1]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
HA [auth B1]IPR027145Periodic tryptophan protein 2Family
GA [auth AG]IPR053826WD repeat-containing protein 75Family
GA [auth AG]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
GA [auth AG]IPR001680WD40 repeatRepeat
GA [auth AG]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
FA [auth AF]IPR019775WD40 repeat, conserved siteConserved Site
FA [auth AF]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
FA [auth AF]IPR001680WD40 repeatRepeat
FA [auth AF]IPR018983U3 small nucleolar RNA-associated protein 15, C-terminalDomain
FA [auth AF]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
EA [auth AE]IPR016024Armadillo-type foldHomologous Superfamily
EA [auth AE]IPR040191U3 small nucleolar RNA-associated protein 10Family
EA [auth AE]IPR021133HEAT, type 2Repeat
EA [auth AE]IPR056473Utp10/HEAT1, HEAT-repeats domainDomain
EA [auth AE]IPR011989Armadillo-like helicalHomologous Superfamily
EA [auth AE]IPR022125U3 small nucleolar RNA-associated protein 10, N-terminalDomain
EA [auth AE]IPR012954BP28, C-terminal domainDomain
DA [auth A9]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
CA [auth A8]IPR053881Utp8, C-terminalDomain
CA [auth A8]IPR018843Utp8, beta-propellerDomain
BA [auth A5]IPR052414U3 small nucleolar RNA-associated WD repeat-containing proteinFamily
BA [auth A5]IPR007148Small-subunit processome, Utp12Domain
BA [auth A5]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
BA [auth A5]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
AA [auth A4]IPR046351U3 small nucleolar RNA-associated protein 4Family
AA [auth A4]IPR001680WD40 repeatRepeat
AA [auth A4]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
AA [auth A4]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
Y [auth 3G],
Z [auth 3H]		IPR002415H/ACA ribonucleoprotein complex, subunit Nhp2-likeFamily
Y [auth 3G],
Z [auth 3H]		IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
Y [auth 3G],
Z [auth 3H]		IPR018492Ribosomal protein eL8/Nhp2 familyFamily
Y [auth 3G],
Z [auth 3H]		IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
Y [auth 3G],
Z [auth 3H]		IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
Y [auth 3G],
Z [auth 3H]		IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
X [auth 3F]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
X [auth 3F]IPR039241Ribosomal RNA-processing protein Rrp9-likeFamily
X [auth 3F]IPR001680WD40 repeatRepeat
X [auth 3F]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
W [auth 3E]IPR042239Nop, C-terminal domainHomologous Superfamily
W [auth 3E]IPR012974Nucleolar protein 58/56, N-terminalDomain
W [auth 3E]IPR002687Nop domainDomain
W [auth 3E]IPR012976NOSICDomain
W [auth 3E]IPR036070Nop domain superfamilyHomologous Superfamily
W [auth 3E]IPR045056Nucleolar protein Nop56/Nop58Family
V [auth 3D]IPR042239Nop, C-terminal domainHomologous Superfamily
V [auth 3D]IPR012974Nucleolar protein 58/56, N-terminalDomain
V [auth 3D]IPR002687Nop domainDomain
V [auth 3D]IPR012976NOSICDomain
V [auth 3D]IPR036070Nop domain superfamilyHomologous Superfamily
V [auth 3D]IPR045056Nucleolar protein Nop56/Nop58Family
T [auth 3B],
U [auth 3C]		IPR000692rRNA 2'-O-methyltransferase fibrillarin-likeFamily
T [auth 3B],
U [auth 3C]		IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
T [auth 3B],
U [auth 3C]		IPR020813Fibrillarin, conserved siteConserved Site
S [auth Sd]IPR028626Ribosomal protein eS28 conserved siteConserved Site
S [auth Sd]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
S [auth Sd]IPR000289Small ribosomal subunit protein eS28Family
R [auth Sc]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
R [auth Sc]IPR000592Small ribosomal subunit protein eS27Family
R [auth Sc]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
Q [auth SZ]IPR053709Eukaryotic Ribosomal Protein eS24Homologous Superfamily
Q [auth SZ]IPR001976Small ribosomal subunit protein eS24Family
Q [auth SZ]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
Q [auth SZ]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
P [auth SY]IPR006032Small ribosomal subunit protein uS12Family
P [auth SY]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
P [auth SY]IPR005680Small ribosomal subunit protein uS12, eukaryota/archaeaFamily
O [auth SX]IPR000630Small ribosomal subunit protein uS8Family
O [auth SX]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
O [auth SX]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
N [auth SR]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
N [auth SR]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
N [auth SR]IPR000754Small ribosomal subunit protein uS9Family
N [auth SR]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
M [auth SP]IPR001971Small ribosomal subunit protein uS11Family
M [auth SP]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
M [auth SP]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
L [auth SO]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
L [auth SO]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
L [auth SO]IPR000589Small ribosomal subunit protein uS15Family
L [auth SO]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotaFamily
K [auth SM]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
K [auth SM]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
K [auth SM]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
K [auth SM]IPR000266Small ribosomal subunit protein uS17Family
K [auth SM]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
J [auth SK]IPR002942RNA-binding S4 domainDomain
J [auth SK]IPR022801Small ribosomal subunit protein uS4Family
J [auth SK]IPR005710Small ribosomal subunit protein uS4, eukaryota/archaeaFamily
J [auth SK]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
J [auth SK]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
J [auth SK]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily