7CW3 | pdb_00007cw3

Cryo-EM structure of Chikungunya virus in complex with mAb CHK-263 IgG (subregion around icosahedral 2-fold vertex)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
IMGT Antibody Annotation
SAbDab Antibody Annotation
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
U [auth s]	SCOP2B Superfamily	Trypsin-like serine proteases	8101317	3000114	SCOP2B (2022-06-29)
RA [auth t]	SCOP2B Superfamily	Trypsin-like serine proteases	8101317	3000114	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
U [auth s]	PA14	e7cw3s1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.1)
RA [auth t]	PA14	e7cw3t1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.1)
W [auth l]	PA14	e7cw3l1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.1)
TA [auth p]	PA14	e7cw3p1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.1)
J [auth r]	PA14	e7cw3r1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.1)
GA [auth n]	PA14	e7cw3n1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.1)
V [auth k]	PA14	e7cw3k1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.1)
SA [auth o]	PA14	e7cw3o1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.1)
I [auth q]	PA14	e7cw3q1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.1)
FA [auth m]	PA14	e7cw3m1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.1)
Z [auth U]	PA14	e7cw3U1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.1)
X [auth W]	PA14	e7cw3W1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.1)
S [auth e]	PA14	e7cw3e1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.1)
Q [auth g]	PA14	e7cw3g1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.1)
PA [auth M]	PA14	e7cw3M1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.1)
O [auth i]	PA14	e7cw3i1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.1)
NA [auth O]	PA14	e7cw3O1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.1)
M [auth I]	PA14	e7cw3I1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.1)
LA [auth Q]	PA14	e7cw3Q1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.1)
K	PA14	e7cw3K1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.1)
JA [auth a]	PA14	e7cw3a1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.1)
HA [auth c]	PA14	e7cw3c1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.1)
G [auth E]	PA14	e7cw3E1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.1)
E [auth G]	PA14	e7cw3G1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.1)
DA [auth S]	PA14	e7cw3S1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.1)
C	PA14	e7cw3C1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.1)
BA [auth Y]	PA14	e7cw3Y1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.1)
A	PA14	e7cw3A1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.1)

IMGT Antibody Annotation IMGT Database Homepage

Chain	Protein Name	Description	Organism Name	Gene Allele Name(s)	Domain Name(s)	Receptor Type	Receptor Description	Provenance Source
GA [auth n], J [auth r], TA [auth p], W [auth l]	mAb CHK-263	L-KAPPA	Mus musculus (house mouse)	IGKV5-4301, IGKJ201, IGKC01, IGKC02	V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA	IG	FAB-GAMMA-1_KAPPA	IMGT (202612-0)
FA [auth m], I [auth q], SA [auth o], V [auth k]	mAb CHK-263	VH-CH1	Mus musculus (house mouse)	IGHV1-8001, IGHJ201, IGHG2C01, IGHG2C02, IGHG2C*03	V-DOMAIN VH, C-DOMAIN CH1	IG	FAB-GAMMA-1_KAPPA	IMGT (202612-0)

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
GA [auth n], J [auth r], TA [auth p], W [auth l]	Light Chain	IGKV5	Kappa	e2 glycoprotein \| e1 glycoprotein, unknown \| unknown, capsid protein \| capsid protein, fab light chain \| fab heavy chain	SAbDab (2026-03-27)
FA [auth m], I [auth q], SA [auth o], V [auth k]	Heavy Chain	IGHV1	-	e2 glycoprotein \| e1 glycoprotein, unknown \| unknown, capsid protein \| capsid protein, fab light chain \| fab heavy chain	SAbDab (2026-03-27)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
AA [auth V], B, CA [auth Z], D, EA [auth T], AA [auth V], B, CA [auth Z], D, EA [auth T], F [auth H], H [auth F], IA [auth d], KA [auth b], L, MA [auth R], N [auth J], OA [auth P], P [auth j], QA [auth N], R [auth h], T [auth f], Y [auth X]	PF00943	Alphavirus E2 glycoprotein (Alpha_E2_glycop)	Alphavirus E2 glycoprotein	-	Family
AA [auth V], B, CA [auth Z], D, EA [auth T], AA [auth V], B, CA [auth Z], D, EA [auth T], F [auth H], H [auth F], IA [auth d], KA [auth b], L, MA [auth R], N [auth J], OA [auth P], P [auth j], QA [auth N], R [auth h], T [auth f], Y [auth X]	PF00944	Alphavirus core protein (Peptidase_S3)	Alphavirus core protein	Also known as coat protein C and capsid protein C. This makes the literature very confusing. Alphaviruses consist of a nucleoprotein core, a lipid membrane which envelopes the core, and glycoprotein spikes protruding from the lipid membrane.	Domain
A, BA [auth Y], C, DA [auth S], E [auth G], A, BA [auth Y], C, DA [auth S], E [auth G], G [auth E], HA [auth c], JA [auth a], K, LA [auth Q], M [auth I], NA [auth O], O [auth i], PA [auth M], Q [auth g], S [auth e], X [auth W], Z [auth U]	PF00944	Alphavirus core protein (Peptidase_S3)	Alphavirus core protein	Also known as coat protein C and capsid protein C. This makes the literature very confusing. Alphaviruses consist of a nucleoprotein core, a lipid membrane which envelopes the core, and glycoprotein spikes protruding from the lipid membrane.	Domain
A, BA [auth Y], C, DA [auth S], E [auth G], A, BA [auth Y], C, DA [auth S], E [auth G], G [auth E], HA [auth c], JA [auth a], K, LA [auth Q], M [auth I], NA [auth O], O [auth i], PA [auth M], Q [auth g], S [auth e], X [auth W], Z [auth U]	PF01589	Alphavirus E1 glycoprotein (Alpha_E1_glycop)	Alphavirus E1 glycoprotein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
RA [auth t], U [auth s]	Capsid protein	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity RNA binding binding nucleic acid binding passive transmembrane transporter activity channel activity transporter activity peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity RNA binding binding nucleic acid binding passive transmembrane transporter activity channel activity transporter activity transmembrane transporter activity structural molecule activity	viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated suppression of host signal transduction pathway symbiont-mediated perturbation of host cellular process symbiont-mediated perturbation of host process symbiont-mediated suppression of host toll-like receptor signaling pathway symbiont-mediated perturbation of host signal transduction pathway viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated suppression of host signal transduction pathway symbiont-mediated perturbation of host cellular process symbiont-mediated perturbation of host process symbiont-mediated suppression of host toll-like receptor signaling pathway symbiont-mediated perturbation of host signal transduction pathway modulation of process of another organism viral gene expression viral translational frameshifting viral translation transmembrane transport localization transport monoatomic ion transmembrane transport monoatomic ion transport cellular process establishment of localization proteolysis metabolic process primary metabolic process protein metabolic process macromolecule metabolic process virion attachment to host cell receptor-mediated virion attachment to host cell adhesion of symbiont to host cell entry receptor-mediated virion attachment to host cell adhesion of symbiont to host	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum other organism part host cell cytoplasm part host intracellular organelle cellular anatomical structure host cell cytoplasm host cell part host intracellular region host cell plasma membrane host cell membrane virion component host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum other organism part host cell cytoplasm part host intracellular organelle cellular anatomical structure host cell cytoplasm host cell part host intracellular region host cell plasma membrane host cell membrane virion component virion membrane viral capsid icosahedral viral capsid T=4 icosahedral viral capsid host cell Golgi apparatus host cell nucleus
GA [auth n], J [auth r], TA [auth p], W [auth l]	Fab light chain	-	-	-
FA [auth m], I [auth q], SA [auth o], V [auth k]	Fab heavy chain	-	-	-
AA [auth V], B, CA [auth Z], D, EA [auth T], AA [auth V], B, CA [auth Z], D, EA [auth T], F [auth H], H [auth F], IA [auth d], KA [auth b], L, MA [auth R], N [auth J], OA [auth P], P [auth j], QA [auth N], R [auth h], T [auth f], Y [auth X]	E2 glycoprotein	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity RNA binding binding nucleic acid binding passive transmembrane transporter activity channel activity transporter activity peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity RNA binding binding nucleic acid binding passive transmembrane transporter activity channel activity transporter activity transmembrane transporter activity structural molecule activity	viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated suppression of host signal transduction pathway symbiont-mediated perturbation of host cellular process symbiont-mediated perturbation of host process symbiont-mediated suppression of host toll-like receptor signaling pathway symbiont-mediated perturbation of host signal transduction pathway viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated suppression of host signal transduction pathway symbiont-mediated perturbation of host cellular process symbiont-mediated perturbation of host process symbiont-mediated suppression of host toll-like receptor signaling pathway symbiont-mediated perturbation of host signal transduction pathway modulation of process of another organism viral gene expression viral translational frameshifting viral translation transmembrane transport localization transport monoatomic ion transmembrane transport monoatomic ion transport cellular process establishment of localization proteolysis metabolic process primary metabolic process protein metabolic process macromolecule metabolic process virion attachment to host cell receptor-mediated virion attachment to host cell adhesion of symbiont to host cell entry receptor-mediated virion attachment to host cell adhesion of symbiont to host	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum other organism part host cell cytoplasm part host intracellular organelle cellular anatomical structure host cell cytoplasm host cell part host intracellular region host cell plasma membrane host cell membrane virion component host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum other organism part host cell cytoplasm part host intracellular organelle cellular anatomical structure host cell cytoplasm host cell part host intracellular region host cell plasma membrane host cell membrane virion component virion membrane viral capsid icosahedral viral capsid T=4 icosahedral viral capsid host cell Golgi apparatus host cell nucleus
A, BA [auth Y], C, DA [auth S], E [auth G], A, BA [auth Y], C, DA [auth S], E [auth G], G [auth E], HA [auth c], JA [auth a], K, LA [auth Q], M [auth I], NA [auth O], O [auth i], PA [auth M], Q [auth g], S [auth e], X [auth W], Z [auth U]	E1 glycoprotein	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity RNA binding binding nucleic acid binding passive transmembrane transporter activity channel activity transporter activity peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity RNA binding binding nucleic acid binding passive transmembrane transporter activity channel activity transporter activity transmembrane transporter activity structural molecule activity	viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated suppression of host signal transduction pathway symbiont-mediated perturbation of host cellular process symbiont-mediated perturbation of host process symbiont-mediated suppression of host toll-like receptor signaling pathway symbiont-mediated perturbation of host signal transduction pathway viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated suppression of host signal transduction pathway symbiont-mediated perturbation of host cellular process symbiont-mediated perturbation of host process symbiont-mediated suppression of host toll-like receptor signaling pathway symbiont-mediated perturbation of host signal transduction pathway modulation of process of another organism viral gene expression viral translational frameshifting viral translation transmembrane transport localization transport monoatomic ion transmembrane transport monoatomic ion transport cellular process establishment of localization proteolysis metabolic process primary metabolic process protein metabolic process macromolecule metabolic process virion attachment to host cell receptor-mediated virion attachment to host cell adhesion of symbiont to host cell entry receptor-mediated virion attachment to host cell adhesion of symbiont to host	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum other organism part host cell cytoplasm part host intracellular organelle cellular anatomical structure host cell cytoplasm host cell part host intracellular region host cell plasma membrane host cell membrane virion component host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum other organism part host cell cytoplasm part host intracellular organelle cellular anatomical structure host cell cytoplasm host cell part host intracellular region host cell plasma membrane host cell membrane virion component virion membrane viral capsid icosahedral viral capsid T=4 icosahedral viral capsid host cell Golgi apparatus host cell nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
RA [auth t], U [auth s]	IPR002533	Alphavirus E3 spike glycoprotein	Domain
RA [auth t], U [auth s]	IPR038055	Flaviviral glycoprotein E, dimerisation domain	Homologous Superfamily
RA [auth t], U [auth s]	IPR014756	Immunoglobulin E-set	Homologous Superfamily
RA [auth t], U [auth s]	IPR042304	Alphavirus E2 glycoprotein, domain A	Homologous Superfamily
RA [auth t], U [auth s]	IPR036253	Flavivirus glycoprotein, central and dimerisation domain superfamily	Homologous Superfamily
RA [auth t], U [auth s]	IPR043504	Peptidase_S1_PA_chymotrypsin	Unknown
RA [auth t], U [auth s]	IPR009003	Peptidase S1, PA clan	Homologous Superfamily
RA [auth t], U [auth s]	IPR042305	Alphavirus E2 glycoprotein, domain B	Homologous Superfamily
RA [auth t], U [auth s]	IPR042306	Alphavirus E2 glycoprotein, domain C	Homologous Superfamily
RA [auth t], U [auth s]	IPR000936	Alphavirus E2 glycoprotein	Family
RA [auth t], U [auth s]	IPR000930	Peptidase S3, togavirin	Domain
RA [auth t], U [auth s]	IPR002548	Alphavirus E1 glycoprotein	Domain
RA [auth t], U [auth s]	IPR000336	Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamily	Homologous Superfamily
AA [auth V], B, CA [auth Z], D, EA [auth T], AA [auth V], B, CA [auth Z], D, EA [auth T], F [auth H], H [auth F], IA [auth d], KA [auth b], L, MA [auth R], N [auth J], OA [auth P], P [auth j], QA [auth N], R [auth h], T [auth f], Y [auth X]	IPR002533	Alphavirus E3 spike glycoprotein	Domain
AA [auth V], B, CA [auth Z], D, EA [auth T], AA [auth V], B, CA [auth Z], D, EA [auth T], F [auth H], H [auth F], IA [auth d], KA [auth b], L, MA [auth R], N [auth J], OA [auth P], P [auth j], QA [auth N], R [auth h], T [auth f], Y [auth X]	IPR038055	Flaviviral glycoprotein E, dimerisation domain	Homologous Superfamily
AA [auth V], B, CA [auth Z], D, EA [auth T], AA [auth V], B, CA [auth Z], D, EA [auth T], F [auth H], H [auth F], IA [auth d], KA [auth b], L, MA [auth R], N [auth J], OA [auth P], P [auth j], QA [auth N], R [auth h], T [auth f], Y [auth X]	IPR014756	Immunoglobulin E-set	Homologous Superfamily
AA [auth V], B, CA [auth Z], D, EA [auth T], AA [auth V], B, CA [auth Z], D, EA [auth T], F [auth H], H [auth F], IA [auth d], KA [auth b], L, MA [auth R], N [auth J], OA [auth P], P [auth j], QA [auth N], R [auth h], T [auth f], Y [auth X]	IPR042304	Alphavirus E2 glycoprotein, domain A	Homologous Superfamily
AA [auth V], B, CA [auth Z], D, EA [auth T], AA [auth V], B, CA [auth Z], D, EA [auth T], F [auth H], H [auth F], IA [auth d], KA [auth b], L, MA [auth R], N [auth J], OA [auth P], P [auth j], QA [auth N], R [auth h], T [auth f], Y [auth X]	IPR036253	Flavivirus glycoprotein, central and dimerisation domain superfamily	Homologous Superfamily
AA [auth V], B, CA [auth Z], D, EA [auth T], AA [auth V], B, CA [auth Z], D, EA [auth T], F [auth H], H [auth F], IA [auth d], KA [auth b], L, MA [auth R], N [auth J], OA [auth P], P [auth j], QA [auth N], R [auth h], T [auth f], Y [auth X]	IPR043504	Peptidase_S1_PA_chymotrypsin	Unknown
AA [auth V], B, CA [auth Z], D, EA [auth T], AA [auth V], B, CA [auth Z], D, EA [auth T], F [auth H], H [auth F], IA [auth d], KA [auth b], L, MA [auth R], N [auth J], OA [auth P], P [auth j], QA [auth N], R [auth h], T [auth f], Y [auth X]	IPR009003	Peptidase S1, PA clan	Homologous Superfamily
AA [auth V], B, CA [auth Z], D, EA [auth T], AA [auth V], B, CA [auth Z], D, EA [auth T], F [auth H], H [auth F], IA [auth d], KA [auth b], L, MA [auth R], N [auth J], OA [auth P], P [auth j], QA [auth N], R [auth h], T [auth f], Y [auth X]	IPR042305	Alphavirus E2 glycoprotein, domain B	Homologous Superfamily
AA [auth V], B, CA [auth Z], D, EA [auth T], AA [auth V], B, CA [auth Z], D, EA [auth T], F [auth H], H [auth F], IA [auth d], KA [auth b], L, MA [auth R], N [auth J], OA [auth P], P [auth j], QA [auth N], R [auth h], T [auth f], Y [auth X]	IPR042306	Alphavirus E2 glycoprotein, domain C	Homologous Superfamily
AA [auth V], B, CA [auth Z], D, EA [auth T], AA [auth V], B, CA [auth Z], D, EA [auth T], F [auth H], H [auth F], IA [auth d], KA [auth b], L, MA [auth R], N [auth J], OA [auth P], P [auth j], QA [auth N], R [auth h], T [auth f], Y [auth X]	IPR000936	Alphavirus E2 glycoprotein	Family
AA [auth V], B, CA [auth Z], D, EA [auth T], AA [auth V], B, CA [auth Z], D, EA [auth T], F [auth H], H [auth F], IA [auth d], KA [auth b], L, MA [auth R], N [auth J], OA [auth P], P [auth j], QA [auth N], R [auth h], T [auth f], Y [auth X]	IPR000930	Peptidase S3, togavirin	Domain
AA [auth V], B, CA [auth Z], D, EA [auth T], AA [auth V], B, CA [auth Z], D, EA [auth T], F [auth H], H [auth F], IA [auth d], KA [auth b], L, MA [auth R], N [auth J], OA [auth P], P [auth j], QA [auth N], R [auth h], T [auth f], Y [auth X]	IPR002548	Alphavirus E1 glycoprotein	Domain
AA [auth V], B, CA [auth Z], D, EA [auth T], AA [auth V], B, CA [auth Z], D, EA [auth T], F [auth H], H [auth F], IA [auth d], KA [auth b], L, MA [auth R], N [auth J], OA [auth P], P [auth j], QA [auth N], R [auth h], T [auth f], Y [auth X]	IPR000336	Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamily	Homologous Superfamily
A, BA [auth Y], C, DA [auth S], E [auth G], A, BA [auth Y], C, DA [auth S], E [auth G], G [auth E], HA [auth c], JA [auth a], K, LA [auth Q], M [auth I], NA [auth O], O [auth i], PA [auth M], Q [auth g], S [auth e], X [auth W], Z [auth U]	IPR002533	Alphavirus E3 spike glycoprotein	Domain
A, BA [auth Y], C, DA [auth S], E [auth G], A, BA [auth Y], C, DA [auth S], E [auth G], G [auth E], HA [auth c], JA [auth a], K, LA [auth Q], M [auth I], NA [auth O], O [auth i], PA [auth M], Q [auth g], S [auth e], X [auth W], Z [auth U]	IPR038055	Flaviviral glycoprotein E, dimerisation domain	Homologous Superfamily
A, BA [auth Y], C, DA [auth S], E [auth G], A, BA [auth Y], C, DA [auth S], E [auth G], G [auth E], HA [auth c], JA [auth a], K, LA [auth Q], M [auth I], NA [auth O], O [auth i], PA [auth M], Q [auth g], S [auth e], X [auth W], Z [auth U]	IPR014756	Immunoglobulin E-set	Homologous Superfamily
A, BA [auth Y], C, DA [auth S], E [auth G], A, BA [auth Y], C, DA [auth S], E [auth G], G [auth E], HA [auth c], JA [auth a], K, LA [auth Q], M [auth I], NA [auth O], O [auth i], PA [auth M], Q [auth g], S [auth e], X [auth W], Z [auth U]	IPR042304	Alphavirus E2 glycoprotein, domain A	Homologous Superfamily
A, BA [auth Y], C, DA [auth S], E [auth G], A, BA [auth Y], C, DA [auth S], E [auth G], G [auth E], HA [auth c], JA [auth a], K, LA [auth Q], M [auth I], NA [auth O], O [auth i], PA [auth M], Q [auth g], S [auth e], X [auth W], Z [auth U]	IPR036253	Flavivirus glycoprotein, central and dimerisation domain superfamily	Homologous Superfamily
A, BA [auth Y], C, DA [auth S], E [auth G], A, BA [auth Y], C, DA [auth S], E [auth G], G [auth E], HA [auth c], JA [auth a], K, LA [auth Q], M [auth I], NA [auth O], O [auth i], PA [auth M], Q [auth g], S [auth e], X [auth W], Z [auth U]	IPR043504	Peptidase_S1_PA_chymotrypsin	Unknown
A, BA [auth Y], C, DA [auth S], E [auth G], A, BA [auth Y], C, DA [auth S], E [auth G], G [auth E], HA [auth c], JA [auth a], K, LA [auth Q], M [auth I], NA [auth O], O [auth i], PA [auth M], Q [auth g], S [auth e], X [auth W], Z [auth U]	IPR009003	Peptidase S1, PA clan	Homologous Superfamily
A, BA [auth Y], C, DA [auth S], E [auth G], A, BA [auth Y], C, DA [auth S], E [auth G], G [auth E], HA [auth c], JA [auth a], K, LA [auth Q], M [auth I], NA [auth O], O [auth i], PA [auth M], Q [auth g], S [auth e], X [auth W], Z [auth U]	IPR042305	Alphavirus E2 glycoprotein, domain B	Homologous Superfamily
A, BA [auth Y], C, DA [auth S], E [auth G], A, BA [auth Y], C, DA [auth S], E [auth G], G [auth E], HA [auth c], JA [auth a], K, LA [auth Q], M [auth I], NA [auth O], O [auth i], PA [auth M], Q [auth g], S [auth e], X [auth W], Z [auth U]	IPR042306	Alphavirus E2 glycoprotein, domain C	Homologous Superfamily
A, BA [auth Y], C, DA [auth S], E [auth G], A, BA [auth Y], C, DA [auth S], E [auth G], G [auth E], HA [auth c], JA [auth a], K, LA [auth Q], M [auth I], NA [auth O], O [auth i], PA [auth M], Q [auth g], S [auth e], X [auth W], Z [auth U]	IPR000936	Alphavirus E2 glycoprotein	Family
A, BA [auth Y], C, DA [auth S], E [auth G], A, BA [auth Y], C, DA [auth S], E [auth G], G [auth E], HA [auth c], JA [auth a], K, LA [auth Q], M [auth I], NA [auth O], O [auth i], PA [auth M], Q [auth g], S [auth e], X [auth W], Z [auth U]	IPR000930	Peptidase S3, togavirin	Domain
A, BA [auth Y], C, DA [auth S], E [auth G], A, BA [auth Y], C, DA [auth S], E [auth G], G [auth E], HA [auth c], JA [auth a], K, LA [auth Q], M [auth I], NA [auth O], O [auth i], PA [auth M], Q [auth g], S [auth e], X [auth W], Z [auth U]	IPR002548	Alphavirus E1 glycoprotein	Domain
A, BA [auth Y], C, DA [auth S], E [auth G], A, BA [auth Y], C, DA [auth S], E [auth G], G [auth E], HA [auth c], JA [auth a], K, LA [auth Q], M [auth I], NA [auth O], O [auth i], PA [auth M], Q [auth g], S [auth e], X [auth W], Z [auth U]	IPR000336	Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamily	Homologous Superfamily