7CVQ | pdb_00007cvq

crystal structure of Arabidopsis CO CCT domain in complex with NF-YB2/YC3 and FT CORE1 DNA

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
J [auth Q]	SCOP2B Superfamily	Core histone-like	8096394	3001387	SCOP2B (2022-06-29)
I [auth L]	SCOP2B Superfamily	Core histone-like	8096394	3001387	SCOP2B (2022-06-29)
H [auth G]	SCOP2B Superfamily	Core histone-like	8096394	3001387	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Core histone-like	8096394	3001387	SCOP2B (2022-06-29)
G [auth P]	SCOP2B Superfamily	Core histone-like	8084788	3001387	SCOP2B (2022-06-29)
F [auth K]	SCOP2B Superfamily	Core histone-like	8084788	3001387	SCOP2B (2022-06-29)
E [auth F]	SCOP2B Superfamily	Core histone-like	8084788	3001387	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Core histone-like	8084788	3001387	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
J [auth Q]	PsbY	e7cvqQ1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PsbY	ECOD (v294.1)
I [auth L]	PsbY	e7cvqL1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PsbY	ECOD (v294.1)
H [auth G]	PsbY	e7cvqG1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PsbY	ECOD (v294.1)
B	PsbY	e7cvqB1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PsbY	ECOD (v294.1)
A	dCMP_cyt_deam_1	e7cvqA01	A: a/b three-layered sandwiches	X: Rossmann-like	H: all-alpha NTP pyrophosphatases	T: Hypothetical protein AF_0060	F: dCMP_cyt_deam_1	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, H [auth G], I [auth L], J [auth Q]	PF00808	Histone-like transcription factor (CBF/NF-Y) and archaeal histone (CBFD_NFYB_HMF)	Histone-like transcription factor (CBF/NF-Y) and archaeal histone	This family includes archaebacterial histones and histone like transcription factors from eukaryotes.	Domain
A, E [auth F], F [auth K], G [auth P]	PF06203	CCT motif (CCT)	CCT motif	-	Motif

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D [auth E], N [auth J], O, P [auth U]	FT CORE1 DNA reverse strand	-	-	-
C [auth D], K [auth I], L [auth N], M [auth T]	FT CORE1 DNA forward strand	-	-	-
B, H [auth G], I [auth L], J [auth Q]	Nuclear transcription factor Y subunit B-2	DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding transcription coregulator activity protein heterodimerization activity protein binding DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding transcription coregulator activity protein heterodimerization activity protein binding protein dimerization activity DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity	response to acid chemical response to stimulus response to stress response to chemical response to oxygen-containing compound response to abiotic stimulus response to water response to water deprivation photoperiodism, flowering developmental process response to light stimulus multicellular organismal process reproductive system development reproductive process response to acid chemical response to stimulus response to stress response to chemical response to oxygen-containing compound response to abiotic stimulus response to water response to water deprivation photoperiodism, flowering developmental process response to light stimulus multicellular organismal process reproductive system development reproductive process vegetative to reproductive phase transition of meristem developmental process involved in reproduction multicellular organism development photoperiodism long-day photoperiodism, flowering anatomical structure development reproductive structure development post-embryonic development response to radiation long-day photoperiodism system development regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process cellular process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle RNA polymerase II transcription regulator complex protein-containing complex CCAAT-binding factor complex nucleus nuclear protein-containing complex transcription regulator complex
A, E [auth F], F [auth K], G [auth P]	Chimera of Nuclear transcription factor Y subunit C-3 and Zinc finger protein CONSTANS	DNA binding binding nucleic acid binding transcription regulator activity DNA-binding transcription factor activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding DNA-binding transcription factor activity, RNA polymerase II-specific sequence-specific DNA binding sequence-specific double-stranded DNA binding DNA binding binding nucleic acid binding transcription regulator activity DNA-binding transcription factor activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding DNA-binding transcription factor activity, RNA polymerase II-specific sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding double-stranded DNA binding transcription regulatory region nucleic acid binding transcription coregulator activity protein heterodimerization activity protein binding protein dimerization activity	developmental process cellular developmental process cell differentiation cellular process photoperiodism, flowering response to light stimulus multicellular organismal process regulation of biological process reproductive system development response to stimulus reproductive process biological regulation vegetative to reproductive phase transition of meristem developmental process involved in reproduction developmental process cellular developmental process cell differentiation cellular process photoperiodism, flowering response to light stimulus multicellular organismal process regulation of biological process reproductive system development response to stimulus reproductive process biological regulation vegetative to reproductive phase transition of meristem developmental process involved in reproduction multicellular organism development photoperiodism regulation of response to stimulus anatomical structure development reproductive structure development post-embryonic development response to radiation response to abiotic stimulus regulation of photoperiodism, flowering system development flower development reproductive shoot system development shoot system development response to far red light response to red or far red light cellular response to stimulus cellular response to red or far red light regulation of cellular process far-red light signaling pathway signaling red or far-red light signaling pathway cellular response to far red light cellular response to radiation cell communication cellular response to environmental stimulus cellular response to light stimulus signal transduction cellular response to abiotic stimulus regulation of multicellular organismal development regulation of developmental process regulation of reproductive process regulation of shoot system development regulation of post-embryonic development regulation of multicellular organismal process regulation of flower development regulation of seedling development seed germination seedling development regulation of seed germination cellular response to gibberellin stimulus response to lipid hormone-mediated signaling pathway response to gibberellin cellular response to endogenous stimulus response to hormone cellular response to hormone stimulus gibberellin mediated signaling pathway response to endogenous stimulus gibberellic acid mediated signaling pathway response to oxygen-containing compound cellular response to oxygen-containing compound cellular response to chemical stimulus response to chemical cellular response to lipid long-day photoperiodism, flowering long-day photoperiodism abscisic acid-activated signaling pathway cellular response to abscisic acid stimulus response to abscisic acid response to alcohol cellular response to alcohol RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II regulation of biosynthetic process primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process positive regulation of biological process regulation of response to red or far red light positive regulation of response to stimulus positive regulation of developmental process photomorphogenesis positive regulation of photomorphogenesis positive regulation of multicellular organismal process regulation of photomorphogenesis positive regulation of post-embryonic development	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, H [auth G], I [auth L], J [auth Q]	IPR009072	Histone-fold	Homologous Superfamily
B, H [auth G], I [auth L], J [auth Q]	IPR027113	Transcription factor NFYB/HAP3	Family
B, H [auth G], I [auth L], J [auth Q]	IPR003956	Transcription factor, NFYB/HAP3, conserved site	Conserved Site
B, H [auth G], I [auth L], J [auth Q]	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	Domain
A, E [auth F], F [auth K], G [auth P]	IPR000315	B-box-type zinc finger	Domain
A, E [auth F], F [auth K], G [auth P]	IPR010402	CCT domain	Domain
A, E [auth F], F [auth K], G [auth P]	IPR049808	CONSTANS-like, B-box-type 1 zinc finger	Domain
A, E [auth F], F [auth K], G [auth P]	IPR045281	Zinc finger protein CONSTANS-like	Family
A, E [auth F], F [auth K], G [auth P]	IPR009072	Histone-fold	Homologous Superfamily
A, E [auth F], F [auth K], G [auth P]	IPR007125	Core Histone H2A/H2B/H3 domain	Domain
A, E [auth F], F [auth K], G [auth P]	IPR050568	Transcription/DNA replication regulator	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.