7CRC | pdb_00007crc

Cryo-EM structure of plant NLR RPP1 tetramer in complex with ATR1

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
G	V-set	e7crcG1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set	ECOD (v294.1)
F	V-set	e7crcF1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set	ECOD (v294.1)
E [auth H]	V-set	e7crcH1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set	ECOD (v294.1)
D [auth E]	V-set	e7crcE1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
D [auth E], E [auth H], F, G	PF22223	ATR1 N-terminal domain (ATR1_N)	ATR1 N-terminal domain	Host-adapted plant pathogens secrete numerous effectors into the host extracellular spaces or inside cells. The A. thaliana TNL receptor RPP1 confers strain-specific immunity through recognition of H.arabidopsidis effector ATR1. ATR1 consists of two ...	Host-adapted plant pathogens secrete numerous effectors into the host extracellular spaces or inside cells. The A. thaliana TNL receptor RPP1 confers strain-specific immunity through recognition of H.arabidopsidis effector ATR1. ATR1 consists of two alpha-helical domains that are involved in interactions with the receptor. The ATR1 N-terminal domain interacts with both, the C-terminal jelly roll/Ig-like domain (C-JID) and the LRRs of the RPP1 receptor [1].	Domain
D [auth E], E [auth H], F, G	PF21421	Avirulence protein ATR1, WY-domain (ATR1_WY-dom)	Avirulence protein ATR1, WY-domain	Avirulence protein ATR1 is a secreted effector that acts as an elicitor of hypersensitive response (HR) specifically on plants. It activates the N-terminal Toll-interleukin-1 receptor (TIR) domain of Arabidopsis NLR RPP1 [1]. This entry represents t ...	Avirulence protein ATR1 is a secreted effector that acts as an elicitor of hypersensitive response (HR) specifically on plants. It activates the N-terminal Toll-interleukin-1 receptor (TIR) domain of Arabidopsis NLR RPP1 [1]. This entry represents the C-terminal helical domain, referred to as the WY-domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D [auth E], E [auth H], F, G	Avirulence protein ATR1	-	biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host process effector-mediated perturbation of host process by symbiont modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle extracellular region host cell cytoplasm
A, B, C, H [auth D]	NAD+ hydrolase (NADase)	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding ADP binding hydrolase activity, acting on glycosyl bonds NAD+ nucleosidase activity, cyclic ADP-ribose generating hydrolase activity hydrolase activity, hydrolyzing N-glycosyl compounds catalytic activity	biological process involved in interspecies interaction between organisms response to stimulus response to other organism response to external stimulus response to external biotic stimulus response to biotic stimulus cellular response to stimulus regulation of biological process regulation of cellular process signaling biological regulation cellular process signal transduction cell communication biological process involved in interspecies interaction between organisms response to stimulus response to other organism response to external stimulus response to external biotic stimulus response to biotic stimulus cellular response to stimulus regulation of biological process regulation of cellular process signaling biological regulation cellular process signal transduction cell communication defense response response to stress	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
D [auth E], E [auth H], F, G	IPR048935	Avirulence protein ATR1, WY-domain	Domain
D [auth E], E [auth H], F, G	IPR053992	ATR1, N-terminal domain	Domain
A, B, C, H [auth D]	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain	Domain
A, B, C, H [auth D]	IPR045344	C-JID domain	Domain
A, B, C, H [auth D]	IPR042197	Apoptotic protease-activating factors, helical domain	Homologous Superfamily
A, B, C, H [auth D]	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
A, B, C, H [auth D]	IPR011713	Leucine-rich repeat 3	Repeat
A, B, C, H [auth D]	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
A, B, C, H [auth D]	IPR035897	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Homologous Superfamily
A, B, C, H [auth D]	IPR058192	Disease resistance protein Roq1-like, winged-helix domain	Domain
A, B, C, H [auth D]	IPR044974	Disease resistance protein, plants	Family
A, B, C, H [auth D]	IPR002182	NB-ARC	Domain
A, B, C, H [auth D]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.