7CR8 | pdb_00007cr8

Synechocystis Cas1-Cas2-prespacerL complex

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
V [auth f]	CRISPR_Cas2	e7cr8f1	A: a+b two layers	X: Alpha-beta plaits	H: CRISPR associated protein Cas2-like (From Topology)	T: CRISPR associated protein Cas2-like	F: CRISPR_Cas2	ECOD (1.6)
U [auth e]	CRISPR_Cas2	e7cr8e1	A: a+b two layers	X: Alpha-beta plaits	H: CRISPR associated protein Cas2-like (From Topology)	T: CRISPR associated protein Cas2-like	F: CRISPR_Cas2	ECOD (1.6)
TA [auth F]	CRISPR_Cas2	e7cr8F1	A: a+b two layers	X: Alpha-beta plaits	H: CRISPR associated protein Cas2-like (From Topology)	T: CRISPR associated protein Cas2-like	F: CRISPR_Cas2	ECOD (1.6)
SA [auth E]	CRISPR_Cas2	e7cr8E1	A: a+b two layers	X: Alpha-beta plaits	H: CRISPR associated protein Cas2-like (From Topology)	T: CRISPR associated protein Cas2-like	F: CRISPR_Cas2	ECOD (1.6)
N [auth V]	CRISPR_Cas2	e7cr8V1	A: a+b two layers	X: Alpha-beta plaits	H: CRISPR associated protein Cas2-like (From Topology)	T: CRISPR associated protein Cas2-like	F: CRISPR_Cas2	ECOD (1.6)
M [auth U]	CRISPR_Cas2	e7cr8U1	A: a+b two layers	X: Alpha-beta plaits	H: CRISPR associated protein Cas2-like (From Topology)	T: CRISPR associated protein Cas2-like	F: CRISPR_Cas2	ECOD (1.6)
LA [auth v]	CRISPR_Cas2	e7cr8v1	A: a+b two layers	X: Alpha-beta plaits	H: CRISPR associated protein Cas2-like (From Topology)	T: CRISPR associated protein Cas2-like	F: CRISPR_Cas2	ECOD (1.6)
KA [auth u]	CRISPR_Cas2	e7cr8u1	A: a+b two layers	X: Alpha-beta plaits	H: CRISPR associated protein Cas2-like (From Topology)	T: CRISPR associated protein Cas2-like	F: CRISPR_Cas2	ECOD (1.6)
F [auth N]	CRISPR_Cas2	e7cr8N1	A: a+b two layers	X: Alpha-beta plaits	H: CRISPR associated protein Cas2-like (From Topology)	T: CRISPR associated protein Cas2-like	F: CRISPR_Cas2	ECOD (1.6)
E [auth M]	CRISPR_Cas2	e7cr8M1	A: a+b two layers	X: Alpha-beta plaits	H: CRISPR associated protein Cas2-like (From Topology)	T: CRISPR associated protein Cas2-like	F: CRISPR_Cas2	ECOD (1.6)
DA [auth n]	CRISPR_Cas2	e7cr8n1	A: a+b two layers	X: Alpha-beta plaits	H: CRISPR associated protein Cas2-like (From Topology)	T: CRISPR associated protein Cas2-like	F: CRISPR_Cas2	ECOD (1.6)
CA [auth m]	CRISPR_Cas2	e7cr8m1	A: a+b two layers	X: Alpha-beta plaits	H: CRISPR associated protein Cas2-like (From Topology)	T: CRISPR associated protein Cas2-like	F: CRISPR_Cas2	ECOD (1.6)
OA [auth A]	Cas_Cas1	e7cr8A1	A: alpha complex topology	X: Cas1 (From Topology)	H: Cas1 (From Topology)	T: Cas1	F: Cas_Cas1	ECOD (1.6)
I [auth Q]	Cas_Cas1	e7cr8Q1	A: alpha complex topology	X: Cas1 (From Topology)	H: Cas1 (From Topology)	T: Cas1	F: Cas_Cas1	ECOD (1.6)
A [auth I]	Cas_Cas1	e7cr8I1	A: alpha complex topology	X: Cas1 (From Topology)	H: Cas1 (From Topology)	T: Cas1	F: Cas_Cas1	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
CA [auth m], DA [auth n], E [auth M], F [auth N], KA [auth u], CA [auth m], DA [auth n], E [auth M], F [auth N], KA [auth u], LA [auth v], M [auth U], N [auth V], SA [auth E], TA [auth F], U [auth e], V [auth f]	PF09827	CRISPR associated protein Cas2 (CRISPR_Cas2)	CRISPR associated protein Cas2	-	Family
A [auth I], AA [auth k], B [auth J], BA [auth l], C [auth K], A [auth I], AA [auth k], B [auth J], BA [auth l], C [auth K], D [auth L], GA [auth q], HA [auth r], I [auth Q], IA [auth s], J [auth R], JA [auth t], K [auth S], L [auth T], OA [auth A], PA [auth B], Q [auth a], QA [auth C], R [auth b], RA [auth D], S [auth c], T [auth d], Y [auth i], Z [auth j]	PF01867	CRISPR associated protein Cas1 (Cas_Cas1)	CRISPR associated protein Cas1	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
FA [auth p], H [auth P], NA [auth x], P [auth X], VA [auth H], FA [auth p], H [auth P], NA [auth x], P [auth X], VA [auth H], X [auth h]	DNA (36-MER)	-	-	-
EA [auth o], G [auth O], MA [auth w], O [auth W], UA [auth G], EA [auth o], G [auth O], MA [auth w], O [auth W], UA [auth G], W [auth g]	DNA (36-MER)	-	-	-
CA [auth m], DA [auth n], E [auth M], F [auth N], KA [auth u], CA [auth m], DA [auth n], E [auth M], F [auth N], KA [auth u], LA [auth v], M [auth U], N [auth V], SA [auth E], TA [auth F], U [auth e], V [auth f]	CRISPR-associated endoribonuclease Cas2 1	endonuclease activity nuclease activity catalytic activity, acting on RNA RNA endonuclease activity catalytic activity, acting on a nucleic acid RNA nuclease activity catalytic activity cation binding ion binding binding metal ion binding small molecule binding	biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus maintenance of CRISPR repeat elements chromosome organization primary metabolic process DNA metabolic process biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus maintenance of CRISPR repeat elements chromosome organization primary metabolic process DNA metabolic process maintenance of DNA repeat elements nucleic acid metabolic process cellular component organization nucleobase-containing compound metabolic process organelle organization cellular process metabolic process cellular component organization or biogenesis macromolecule metabolic process	-
A [auth I], AA [auth k], B [auth J], BA [auth l], C [auth K], A [auth I], AA [auth k], B [auth J], BA [auth l], C [auth K], D [auth L], GA [auth q], HA [auth r], I [auth Q], IA [auth s], J [auth R], JA [auth t], K [auth S], L [auth T], OA [auth A], PA [auth B], Q [auth a], QA [auth C], R [auth b], RA [auth D], S [auth c], T [auth d], Y [auth i], Z [auth j]	CRISPR-associated endonuclease Cas1	DNA binding binding nucleic acid binding DNA endonuclease activity endonuclease activity catalytic activity, acting on DNA nuclease activity catalytic activity, acting on a nucleic acid catalytic activity DNA nuclease activity hydrolase activity cation binding ion binding metal ion binding DNA binding binding nucleic acid binding DNA endonuclease activity endonuclease activity catalytic activity, acting on DNA nuclease activity catalytic activity, acting on a nucleic acid catalytic activity DNA nuclease activity hydrolase activity cation binding ion binding metal ion binding small molecule binding	maintenance of CRISPR repeat elements chromosome organization primary metabolic process DNA metabolic process maintenance of DNA repeat elements nucleic acid metabolic process cellular component organization nucleobase-containing compound metabolic process organelle organization cellular process metabolic process cellular component organization or biogenesis macromolecule metabolic process biological process involved in interspecies interaction between organisms maintenance of CRISPR repeat elements chromosome organization primary metabolic process DNA metabolic process maintenance of DNA repeat elements nucleic acid metabolic process cellular component organization nucleobase-containing compound metabolic process organelle organization cellular process metabolic process cellular component organization or biogenesis macromolecule metabolic process biological process involved in interspecies interaction between organisms response to stimulus response to other organism defense response defense response to symbiont response to external stimulus clearance of foreign intracellular nucleic acids response to biotic stimulus defense response to other organism response to stress CRISPR-cas system response to external biotic stimulus defense response to virus response to virus	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
CA [auth m], DA [auth n], E [auth M], F [auth N], KA [auth u], CA [auth m], DA [auth n], E [auth M], F [auth N], KA [auth u], LA [auth v], M [auth U], N [auth V], SA [auth E], TA [auth F], U [auth e], V [auth f]	IPR019199	Virulence-associated protein D / CRISPR associated protein Cas2	Family
CA [auth m], DA [auth n], E [auth M], F [auth N], KA [auth u], CA [auth m], DA [auth n], E [auth M], F [auth N], KA [auth u], LA [auth v], M [auth U], N [auth V], SA [auth E], TA [auth F], U [auth e], V [auth f]	IPR021127	CRISPR-associated endonuclease Cas2	Family
A [auth I], AA [auth k], B [auth J], BA [auth l], C [auth K], A [auth I], AA [auth k], B [auth J], BA [auth l], C [auth K], D [auth L], GA [auth q], HA [auth r], I [auth Q], IA [auth s], J [auth R], JA [auth t], K [auth S], L [auth T], OA [auth A], PA [auth B], Q [auth a], QA [auth C], R [auth b], RA [auth D], S [auth c], T [auth d], Y [auth i], Z [auth j]	IPR002729	CRISPR-associated protein Cas1	Family
A [auth I], AA [auth k], B [auth J], BA [auth l], C [auth K], A [auth I], AA [auth k], B [auth J], BA [auth l], C [auth K], D [auth L], GA [auth q], HA [auth r], I [auth Q], IA [auth s], J [auth R], JA [auth t], K [auth S], L [auth T], OA [auth A], PA [auth B], Q [auth a], QA [auth C], R [auth b], RA [auth D], S [auth c], T [auth d], Y [auth i], Z [auth j]	IPR042206	CRISPR-associated endonuclease Cas1, C-terminal domain	Homologous Superfamily
A [auth I], AA [auth k], B [auth J], BA [auth l], C [auth K], A [auth I], AA [auth k], B [auth J], BA [auth l], C [auth K], D [auth L], GA [auth q], HA [auth r], I [auth Q], IA [auth s], J [auth R], JA [auth t], K [auth S], L [auth T], OA [auth A], PA [auth B], Q [auth a], QA [auth C], R [auth b], RA [auth D], S [auth c], T [auth d], Y [auth i], Z [auth j]	IPR042211	CRISPR-associated endonuclease Cas1, N-terminal domain	Homologous Superfamily
A [auth I], AA [auth k], B [auth J], BA [auth l], C [auth K], A [auth I], AA [auth k], B [auth J], BA [auth l], C [auth K], D [auth L], GA [auth q], HA [auth r], I [auth Q], IA [auth s], J [auth R], JA [auth t], K [auth S], L [auth T], OA [auth A], PA [auth B], Q [auth a], QA [auth C], R [auth b], RA [auth D], S [auth c], T [auth d], Y [auth i], Z [auth j]	IPR023843	CRISPR-associated protein Cas1, cyanobacteria-type	Family
A [auth I], AA [auth k], B [auth J], BA [auth l], C [auth K], A [auth I], AA [auth k], B [auth J], BA [auth l], C [auth K], D [auth L], GA [auth q], HA [auth r], I [auth Q], IA [auth s], J [auth R], JA [auth t], K [auth S], L [auth T], OA [auth A], PA [auth B], Q [auth a], QA [auth C], R [auth b], RA [auth D], S [auth c], T [auth d], Y [auth i], Z [auth j]	IPR050646	CRISPR-associated endonuclease Cas1	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.