Cryo-EM structure of 80S ribosome from mouse testis
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| I [auth LI] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8105828 | 3000884 | SCOP2B (2022-06-29) |
| WB [auth SZ] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8105812 | 3000034 | SCOP2B (2022-06-29) |
| UB [auth SW] | SCOP2B Superfamily | Ribosomal protein S8 | 8105804 | 3000709 | SCOP2B (2022-06-29) |
| TB [auth SO] | SCOP2B Superfamily | Translational machinery components | 8105806 | 3000571 | SCOP2B (2022-06-29) |
| OB [auth Sg] | SCOP2B Superfamily | WD40 repeat-like | 8105826 | 3001694 | SCOP2B (2022-06-29) |
| NB [auth Sd] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8105810 | 3000068 | SCOP2B (2022-06-29) |
| MB [auth Sc] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8105816 | 3000135 | SCOP2B (2022-06-29) |
| LB [auth Sa] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8105814 | 3000068 | SCOP2B (2022-06-29) |
| JB [auth SV] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8105940 | 3000068 | SCOP2B (2022-06-29) |
| IB [auth SU] | SCOP2B Superfamily | Ribosomal protein S10 | 8105798 | 3001336 | SCOP2B (2022-06-29) |
| HB [auth ST] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8105942 | 3000034 | SCOP2B (2022-06-29) |
| GB [auth SS] | SCOP2B Superfamily | S13-like H2TH domain | 8105808 | 3000053 | SCOP2B (2022-06-29) |
| EB [auth SQ] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8105786 | 3000100 | SCOP2B (2022-06-29) |
| BB [auth SK] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8105824 | 3000034 | SCOP2B (2022-06-29) |
| YA [auth SF] | SCOP2 Family | Ribosomal protein S7 | 8106630 | 4001112 | SCOP2 (2022-06-29) |
| YA [auth SF] | SCOP2 Superfamily | Ribosomal protein S7 | 8106631 | 3000799 | SCOP2 (2022-06-29) |
| YA [auth SF] | SCOP2B Superfamily | Ribosomal protein S7 | 8105830 | 3000799 | SCOP2B (2022-06-29) |
| VA [auth SB] | SCOP2B Superfamily | Ribosomal S3Ae-like | 8103963 | 3002166 | SCOP2B (2022-06-29) |
| UA [auth SA] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8105788 | 3001397 | SCOP2B (2022-06-29) |
| OA [auth Lp] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8105802 | 3001320 | SCOP2B (2022-06-29) |
| D [auth LD] | SCOP2B Superfamily | Translational machinery components | 8098706 | 3000571 | SCOP2B (2022-06-29) |
| KA [auth Ll] | SCOP2 Family | ribosomal protein l39e | 8106636 | 4001518 | SCOP2 (2022-06-29) |
| KA [auth Ll] | SCOP2 Superfamily | Ribosomal protein L39e | 8106637 | 3001756 | SCOP2 (2022-06-29) |
| JA [auth Lk] | SCOP2B Superfamily | Ribosomal L38e protein-like | 8100550 | 3002206 | SCOP2B (2022-06-29) |
| FA [auth Lg] | SCOP2B Superfamily | Ribosomal protein L34e-like | 8100474 | 3002203 | SCOP2B (2022-06-29) |
| EA [auth Lf] | SCOP2B Superfamily | Translational proteins | 8098188 | 3000811 | SCOP2B (2022-06-29) |
| DA [auth Le] | SCOP2B Superfamily | Ribosomal protein L32e | 8102144 | 3000982 | SCOP2B (2022-06-29) |
| BA [auth Lc] | SCOP2B Superfamily | L30e-like | 8098866 | 3001739 | SCOP2B (2022-06-29) |
| AA [auth Lb] | SCOP2B Superfamily | Ribosomal protein L29e | 8098704 | 3002157 | SCOP2B (2022-06-29) |
| Z [auth La] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8098508 | 3001045 | SCOP2B (2022-06-29) |
| X [auth LY] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8105800 | 3000334 | SCOP2B (2022-06-29) |
| U [auth LV] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8098862 | 3000433 | SCOP2B (2022-06-29) |
| T [auth LU] | SCOP2B Superfamily | 60S Ribosomal protein L22e | 8098900 | 3002158 | SCOP2B (2022-06-29) |
| B [auth LB] | SCOP2B Superfamily | Translational proteins | 8098608 | 3000811 | SCOP2B (2022-06-29) |
| Q [auth LR] | SCOP2B Superfamily | Ribosomal protein L19 (L19e) | 8098958 | 3000890 | SCOP2B (2022-06-29) |
| O [auth LP] | SCOP2 Family | Ribosomal protein L22 | 8106584 | 4001212 | SCOP2 (2022-06-29) |
| O [auth LP] | SCOP2 Superfamily | Ribosomal protein L22 | 8106585 | 3001078 | SCOP2 (2022-06-29) |
| O [auth LP] | SCOP2B Superfamily | Ribosomal protein L22 | 8100468 | 3001078 | SCOP2B (2022-06-29) |
| M [auth LN] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8100472 | 3000210 | SCOP2B (2022-06-29) |
| K [auth LL] | SCOP2B Superfamily | Ribosomal protein L13e-like | 8098708 | 3002162 | SCOP2B (2022-06-29) |
| J [auth LJ] | SCOP2B Superfamily | RL5-like | 8100470 | 3001709 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| I [auth LI] | DUF1870 | e7cpvLI1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| H [auth LH] | DUF1870 | e7cpvLH1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| YB [auth Se] | DUF1870 | e7cpvSe1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| XB [auth Sb] | DUF1870 | e7cpvSb1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| WB [auth SZ] | DUF1870 | e7cpvSZ1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| VB [auth SY] | DUF1870 | e7cpvSY1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| UB [auth SW] | DUF1870 | e7cpvSW1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| TB [auth SO] | DUF1870 | e7cpvSO1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| SB [auth SN] | DUF1870 | e7cpvSN1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| RB [auth SJ] | DUF1870 | e7cpvSJ1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| G [auth LG] | DUF1870 | e7cpvLG1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| QB [auth SG] | DUF1870 | e7cpvSG1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| PB [auth SC] | DUF1870 | e7cpvSC1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| OB [auth Sg] | DUF1870 | e7cpvSg1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| NB [auth Sd] | DUF1870 | e7cpvSd1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| MB [auth Sc] | DUF1870 | e7cpvSc1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| LB [auth Sa] | DUF1870 | e7cpvSa1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| KB [auth SX] | DUF1870 | e7cpvSX1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| JB [auth SV] | Hemagglutinin | e7cpvSV1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Hemagglutinin | ECOD (develop294) |
| IB [auth SU] | DUF1870 | e7cpvSU1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| HB [auth ST] | DUF1870 | e7cpvST1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| F [auth LF] | DUF1870 | e7cpvLF1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| GB [auth SS] | DUF1870 | e7cpvSS1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| FB [auth SR] | DUF1870 | e7cpvSR1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| EB [auth SQ] | DUF1870 | e7cpvSQ1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| DB [auth SP] | DUF1870 | e7cpvSP1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| CB [auth SL] | DUF1870 | e7cpvSL1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| BB [auth SK] | DUF1870 | e7cpvSK1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| AB [auth SI] | DUF1870 | e7cpvSI1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| ZA [auth SH] | DUF1870 | e7cpvSH1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| YA [auth SF] | DUF1870 | e7cpvSF1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| XA [auth SE] | DUF1870 | e7cpvSE1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| E [auth LE] | DUF1870 | e7cpvLE1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| WA [auth SD] | Hemagglutinin | e7cpvSD1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Hemagglutinin | ECOD (develop294) |
| VA [auth SB] | DUF1870 | e7cpvSB1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| UA [auth SA] | DUF1870 | e7cpvSA1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| PA [auth Lr] | DUF1870 | e7cpvLr1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| OA [auth Lp] | DUF1870 | e7cpvLp1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| NA [auth Lo] | DUF1870 | e7cpvLo1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| D [auth LD] | DUF1870 | e7cpvLD1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| MA [auth Ln] | DUF1870 | e7cpvLn1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| LA [auth Lm] | DUF1870 | e7cpvLm1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| KA [auth Ll] | Hemagglutinin | e7cpvLl1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Hemagglutinin | ECOD (develop294) |
| JA [auth Lk] | DUF1870 | e7cpvLk1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| IA [auth Lj] | DUF1870 | e7cpvLj1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| HA [auth Li] | DUF1870 | e7cpvLi1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| GA [auth Lh] | DUF1870 | e7cpvLh1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| FA [auth Lg] | DUF1870 | e7cpvLg1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| EA [auth Lf] | DUF1870 | e7cpvLf1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| DA [auth Le] | DUF1870 | e7cpvLe1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| C [auth LC] | DUF1870 | e7cpvLC1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| CA [auth Ld] | DUF1870 | e7cpvLd1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| BA [auth Lc] | DUF1870 | e7cpvLc1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| AA [auth Lb] | DUF1870 | e7cpvLb1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| Z [auth La] | DUF1870 | e7cpvLa1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| Y [auth LZ] | DUF1870 | e7cpvLZ1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| X [auth LY] | DUF1870 | e7cpvLY1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| W [auth LX] | DUF1870 | e7cpvLX1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| V [auth LW] | DUF1870 | e7cpvLW1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| U [auth LV] | DUF1870 | e7cpvLV1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| T [auth LU] | DUF1870 | e7cpvLU1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| B [auth LB] | DUF1870 | e7cpvLB1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| S [auth LT] | DUF1870 | e7cpvLT1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| R [auth LS] | DUF1870 | e7cpvLS1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| Q [auth LR] | DUF1870 | e7cpvLR1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| P [auth LQ] | DUF1870 | e7cpvLQ1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| O [auth LP] | DUF1870 | e7cpvLP1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| N [auth LO] | DUF1870 | e7cpvLO1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| M [auth LN] | DUF1870 | e7cpvLN1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| L [auth LM] | DUF1870 | e7cpvLM1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| K [auth LL] | DUF1870 | e7cpvLL1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| J [auth LJ] | DUF1870 | e7cpvLJ1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
| A [auth LA] | DUF1870 | e7cpvLA1 | A: alpha bundles | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1870 | ECOD (develop294) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| I [auth LI] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | Domain | |
| I [auth LI] | PF01158 | Ribosomal protein L36e (Ribosomal_L36e) | Ribosomal protein L36e | - | Family |
| H [auth LH] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | Domain | |
| H [auth LH] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
| UB [auth SW] | PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | Domain | |
| TB [auth SO] | PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family |
| SB [auth SN] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | Domain | |
| RB [auth SJ] | PF00163 | Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) | Ribosomal protein S4/S9 N-terminal domain | - | Family |
| RB [auth SJ] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
| QB [auth SG] | PF01092 | Ribosomal protein S6e (Ribosomal_S6e) | Ribosomal protein S6e | - | Family |
| QB [auth SG] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
| PB [auth SC] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | Domain | |
| PB [auth SC] | PF01200 | Ribosomal protein S28e (Ribosomal_S28e) | Ribosomal protein S28e | Domain | |
| PB [auth SC] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | Domain | |
| KB [auth SX] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. | Domain |
| JB [auth SV] | PF01249 | Ribosomal protein S21e (Ribosomal_S21e) | Ribosomal protein S21e | - | Family |
| IB [auth SU] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
| HB [auth ST] | PF01090 | Ribosomal protein S19e (Ribosomal_S19e) | Ribosomal protein S19e | - | Family |
| F [auth LF] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
| F [auth LF] | PF01247 | Ribosomal protein L35Ae (Ribosomal_L35Ae) | Ribosomal protein L35Ae | This entry represents the ribosomal eL33 previously known as L35A, eukaryotic and archaebacterial ribosomal proteins. | Domain |
| GB [auth SS] | PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family |
| EB [auth SQ] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
| DB [auth SP] | PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | Domain | |
| CB [auth SL] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | Domain | |
| CB [auth SL] | PF16205 | Ribosomal_S17 N-terminal (Ribosomal_S17_N) | Ribosomal_S17 N-terminal | - | Family |
| BB [auth SK] | PF03501 | Plectin/S10 domain (S10_plectin) | Plectin/S10 domain | This presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding. | Domain |
| AB [auth SI] | PF01201 | Ribosomal protein S8e (Ribosomal_S8e) | Ribosomal protein S8e | - | Family |
| YA [auth SF] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
| XA [auth SE] | PF00900 | Ribosomal family S4e (Ribosomal_S4e) | Ribosomal family S4e | - | Family |
| XA [auth SE] | PF16121 | 40S ribosomal protein S4 C-terminus (40S_S4_C) | 40S ribosomal protein S4 C-terminus | - | Family |
| XA [auth SE] | PF08071 | RS4NT (NUC023) domain (RS4NT) | RS4NT (NUC023) domain | This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. | Domain |
| XA [auth SE] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| E [auth LE] | PF01655 | Ribosomal protein L32 (Ribosomal_L32e) | Ribosomal protein L32 | - | Family |
| E [auth LE] | PF01159 | Ribosomal protein L6e (Ribosomal_L6e) | Ribosomal protein L6e | - | Family |
| WA [auth SD] | PF07650 | KH domain (KH_2) | KH domain | Domain | |
| WA [auth SD] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
| WA [auth SD] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
| VA [auth SB] | PF01667 | Ribosomal protein S27 (Ribosomal_S27e) | Ribosomal protein S27 | - | Family |
| UA [auth SA] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
| UA [auth SA] | PF16122 | 40S ribosomal protein SA C-terminus (40S_SA_C) | 40S ribosomal protein SA C-terminus | - | Family |
| D [auth LD] | PF17144 | Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e) | Ribosomal large subunit proteins 60S L5, and 50S L18 | - | Family |
| D [auth LD] | PF01198 | Ribosomal protein L31e (Ribosomal_L31e) | Ribosomal protein L31e | - | Family |
| D [auth LD] | PF14204 | Ribosomal L18 C-terminal region (Ribosomal_L18_c) | Ribosomal L18 C-terminal region | This domain is the C-terminal end of ribosomal L18/L5 proteins. | Domain |
| C [auth LC] | PF14374 | 60S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C) | 60S ribosomal protein L4 C-terminal domain | This family is found at the very C-terminal of 60 ribosomal L4 proteins. | Domain |
| C [auth LC] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
| Y [auth LZ] | PF01777 | Ribosomal L27e protein family (Ribosomal_L27e) | Ribosomal L27e protein family | - | Family |
| Y [auth LZ] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| X [auth LY] | PF16906 | Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26) | Ribosomal proteins L26 eukaryotic, L24P archaeal | - | Family |
| X [auth LY] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| W [auth LX] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
| V [auth LW] | PF01246 | Ribosomal protein L24e (Ribosomal_L24e) | Ribosomal protein L24e | Domain | |
| U [auth LV] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | Domain | |
| B [auth LB] | PF01779 | Ribosomal L29e protein family (Ribosomal_L29e) | Ribosomal L29e protein family | - | Family |
| S [auth LT] | PF01157 | Ribosomal protein L21e (Ribosomal_L21e) | Ribosomal protein L21e | - | Family |
| R [auth LS] | PF01775 | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A) | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A | This family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. | Domain |
| Q [auth LR] | PF01778 | Ribosomal L28e protein family (Ribosomal_L28e) | Ribosomal L28e protein family | - | Family |
| Q [auth LR] | PF01280 | Ribosomal protein L19e, N-terminal domain (Ribosomal_L19e) | Ribosomal protein L19e, N-terminal domain | This domain is found at the N-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. | Domain |
| Q [auth LR] | PF25476 | Ribosomal protein L19e, C-terminal domain (Ribosomal_L19e_C) | Ribosomal protein L19e, C-terminal domain | This domain is found at the C-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. | Domain |
| P [auth LQ] | PF17135 | Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18) | Ribosomal protein 60S L18 and 50S L18e | - | Family |
| O [auth LP] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
| O [auth LP] | PF01780 | Ribosomal L37ae protein family (Ribosomal_L37ae) | Ribosomal L37ae protein family | - | Family |
| N [auth LO] | PF00935 | Ribosomal protein L44 (Ribosomal_L44) | Ribosomal protein L44 | - | Family |
| N [auth LO] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
| M [auth LN] | PF05162 | Ribosomal protein L41 (Ribosomal_L41) | Ribosomal protein L41 | - | Family |
| M [auth LN] | PF00827 | Ribosomal L15 (Ribosomal_L15e) | Ribosomal L15 | - | Family |
| L [auth LM] | PF01020 | Ribosomal L40e family (Ribosomal_L40e) | Ribosomal L40e family | Bovine L40 has been identified as a secondary RNA binding protein [1]. L40 is fused to a ubiquitin protein [2]. | Domain |
| L [auth LM] | PF01929 | Ribosomal protein L14 (Ribosomal_L14e) | Ribosomal protein L14 | - | Family |
| K [auth LL] | PF00832 | Ribosomal L39 protein (Ribosomal_L39) | Ribosomal L39 protein | - | Family |
| K [auth LL] | PF01294 | Ribosomal protein L13e (Ribosomal_L13e) | Ribosomal protein L13e | - | Family |
| J [auth LJ] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | Domain | |
| J [auth LJ] | PF01907 | Ribosomal protein L37e (Ribosomal_L37e) | Ribosomal protein L37e | - | Family |
| J [auth LJ] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
| A [auth LA] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | Domain | |
| A [auth LA] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. | Domain |














