7CPC | pdb_00007cpc

His-Mediated Reversible Self-assembly of Ferritin Nanocage with Ni binding

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d7cpcf1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	Kuruma prawn (Penaeus japonicus ) [TaxId: 27405 ],	SCOPe (2.08)
F	d7cpcf2	Artifacts	Tags	Tags	Tags	C-terminal Tags	Kuruma prawn (Penaeus japonicus ) [TaxId: 27405 ],	SCOPe (2.08)
E	d7cpce1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	Kuruma prawn (Penaeus japonicus ) [TaxId: 27405 ],	SCOPe (2.08)
E	d7cpce2	Artifacts	Tags	Tags	Tags	C-terminal Tags	Kuruma prawn (Penaeus japonicus ) [TaxId: 27405 ],	SCOPe (2.08)
D	d7cpcd1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	Kuruma prawn (Penaeus japonicus ) [TaxId: 27405 ],	SCOPe (2.08)
D	d7cpcd2	Artifacts	Tags	Tags	Tags	C-terminal Tags	Kuruma prawn (Penaeus japonicus ) [TaxId: 27405 ],	SCOPe (2.08)
C	d7cpcc1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	Kuruma prawn (Penaeus japonicus ) [TaxId: 27405 ],	SCOPe (2.08)
C	d7cpcc2	Artifacts	Tags	Tags	Tags	C-terminal Tags	Kuruma prawn (Penaeus japonicus ) [TaxId: 27405 ],	SCOPe (2.08)
B [auth A]	d7cpca1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	Kuruma prawn (Penaeus japonicus ) [TaxId: 27405 ],	SCOPe (2.08)
B [auth A]	d7cpca2	Artifacts	Tags	Tags	Tags	C-terminal Tags	Kuruma prawn (Penaeus japonicus ) [TaxId: 27405 ],	SCOPe (2.08)
A [auth B]	d7cpcb1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	Kuruma prawn (Penaeus japonicus ) [TaxId: 27405 ],	SCOPe (2.08)
A [auth B]	d7cpcb2	Artifacts	Tags	Tags	Tags	C-terminal Tags	Kuruma prawn (Penaeus japonicus ) [TaxId: 27405 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	Ferritin-like	8063908	3001658	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Ferritin-like	8063908	3001658	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Ferritin-like	8063908	3001658	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Ferritin-like	8063908	3001658	SCOP2B (2022-06-29)
B [auth A]	SCOP2B Superfamily	Ferritin-like	8063908	3001658	SCOP2B (2022-06-29)
A [auth B]	SCOP2B Superfamily	Ferritin-like	8063908	3001658	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	PsbY	e7cpcF1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PsbY	ECOD (v294.1)
E	PsbY	e7cpcE1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PsbY	ECOD (v294.1)
D	PsbY	e7cpcD1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PsbY	ECOD (v294.1)
C	PsbY	e7cpcC1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PsbY	ECOD (v294.1)
B [auth A]	PsbY	e7cpcA1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PsbY	ECOD (v294.1)
A [auth B]	Acetyltransf_1	e7cpcB1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Acetyltransf_1	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (utative)
E	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (utative)
D	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (utative)
C	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (utative)
B [auth A]	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (utative)
A [auth B]	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B], B [auth A], C, D, E, A [auth B], B [auth A], C, D, E, F	Ferritin	cation binding transition metal ion binding iron ion binding ion binding binding ferrous iron binding metal ion binding small molecule binding ferric iron binding oxidoreductase activity, acting on metal ions oxidoreductase activity ferroxidase activity oxidoreductase activity, acting on metal ions, oxygen as acceptor catalytic activity	intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis localization transport iron ion transport transition metal ion transport intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis localization transport iron ion transport transition metal ion transport monoatomic ion transport monoatomic cation transport establishment of localization metal ion transport	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], B [auth A], C, D, E, A [auth B], B [auth A], C, D, E, F	IPR009040	Ferritin-like diiron domain	Domain
A [auth B], B [auth A], C, D, E, A [auth B], B [auth A], C, D, E, F	IPR012347	Ferritin-like	Homologous Superfamily
A [auth B], B [auth A], C, D, E, A [auth B], B [auth A], C, D, E, F	IPR009078	Ferritin-like superfamily	Homologous Superfamily
A [auth B], B [auth A], C, D, E, A [auth B], B [auth A], C, D, E, F	IPR008331	Ferritin/DPS domain	Domain
A [auth B], B [auth A], C, D, E, A [auth B], B [auth A], C, D, E, F	IPR001519	Ferritin	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.