7CJ2
Crystal structure of the Fab antibody complexed with human YKL-40
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
D [auth B] | SCOP2B Superfamily | (Trans)glycosidases | 8044512 | 3000313 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2B Superfamily | Chitinase insertion domain | 8044513 | 3000666 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2B Superfamily | (Trans)glycosidases | 8044512 | 3000313 | SCOP2B (2022-06-29) |
C [auth A] | SCOP2B Superfamily | Chitinase insertion domain | 8044513 | 3000666 | SCOP2B (2022-06-29) |
C [auth A] | SCOP2B Superfamily | (Trans)glycosidases | 8044512 | 3000313 | SCOP2B (2022-06-29) |
C [auth A] | SCOP2B Superfamily | (Trans)glycosidases | 8044512 | 3000313 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth C] | PF07654 | e7cj2C2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
A [auth C] | PF07686 | e7cj2C1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
E [auth K] | PF07654 | e7cj2K2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
E [auth K] | PF07686 | e7cj2K1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
B [auth D] | PF07654 | e7cj2D2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
B [auth D] | PF07686 | e7cj2D1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
F [auth L] | PF07654 | e7cj2L2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
F [auth L] | PF07686 | e7cj2L1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
D [auth B] | F_UNCLASSIFIED | e7cj2B2 | A: a+b two layers | X: FKBP-like | H: Chitinase insertion domain (From Topology) | T: Chitinase insertion domain | F: F_UNCLASSIFIED | ECOD (1.6) |
D [auth B] | PF00704 | e7cj2B1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00704 | ECOD (1.6) |
C [auth A] | F_UNCLASSIFIED | e7cj2A2 | A: a+b two layers | X: FKBP-like | H: Chitinase insertion domain (From Topology) | T: Chitinase insertion domain | F: F_UNCLASSIFIED | ECOD (1.6) |
C [auth A] | PF00704 | e7cj2A1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00704 | ECOD (1.6) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
A [auth C], E [auth K] | Heavy Chain | IGHV3 | - | chitinase 3-like 1 (cartilage glycoprotein-39), isoformcra_a | SAbDab (2024-05-10) |
B [auth D], F [auth L] | Light Chain | IGKV1 | Kappa | chitinase 3-like 1 (cartilage glycoprotein-39), isoformcra_a | SAbDab (2024-05-10) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth A], D [auth B] | PF00704 | Glycosyl hydrolases family 18 (Glyco_hydro_18) | Glycosyl hydrolases family 18 | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
C [auth A], D [auth B] | IPR011583 | Chitinase II | Domain |
C [auth A], D [auth B] | IPR029070 | Chitinase insertion domain superfamily | Homologous Superfamily |
C [auth A], D [auth B] | IPR001223 | Glycoside hydrolase family 18, catalytic domain | Domain |
C [auth A], D [auth B] | IPR017853 | Glycoside hydrolase superfamily | Homologous Superfamily |