Annotations: 7CEE

Crystal structure of mouse neuroligin-3

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	alpha/beta-Hydrolases	8102701	3000102	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	alpha/beta-Hydrolases	8102701	3000102	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e7ceeA1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F:	ECOD (v294.2)
B		e7ceeB1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F:	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Neuroligin-3	cell adhesion molecule binding protein binding binding cell adhesion mediator activity signaling receptor binding neurexin family protein binding molecular transducer activity signaling receptor activity scaffold protein binding	cellular response to stimulus positive regulation of cell communication multicellular organismal process regulation of postsynaptic membrane potential system process regulation of cellular process positive regulation of signal transduction response to stimulus signaling modulation of chemical synaptic transmission regulation of system process positive regulation of excitatory postsynaptic potential positive regulation of biological process regulation of signal transduction chemical synaptic transmission, postsynaptic cellular response to stimulus positive regulation of cell communication multicellular organismal process regulation of postsynaptic membrane potential system process regulation of cellular process positive regulation of signal transduction response to stimulus signaling modulation of chemical synaptic transmission regulation of system process positive regulation of excitatory postsynaptic potential positive regulation of biological process regulation of signal transduction chemical synaptic transmission, postsynaptic cell communication positive regulation of response to stimulus synaptic signaling modulation of excitatory postsynaptic potential regulation of multicellular organismal process signal transduction regulation of biological quality positive regulation of cellular process trans-synaptic signaling regulation of biological process regulation of signaling cell surface receptor signaling pathway nervous system process biological regulation cell-cell signaling chemical synaptic transmission regulation of nervous system process regulation of trans-synaptic signaling regulation of response to stimulus anterograde trans-synaptic signaling regulation of cell communication cellular process excitatory postsynaptic potential regulation of membrane potential positive regulation of signaling rhythmic synaptic transmission behavior learning learning or memory cognition regulation of localization transport regulation of signaling receptor activity monoatomic ion transmembrane transport regulation of AMPA receptor activity regulation of transmembrane transporter activity regulation of monoatomic ion transmembrane transport localization positive regulation of molecular function positive regulation of monoatomic ion transport positive regulation of transmembrane transport monoatomic ion transport positive regulation of monoatomic ion transmembrane transport regulation of transport regulation of monoatomic ion transport establishment of localization transmembrane transport regulation of molecular function positive regulation of AMPA receptor activity regulation of transmembrane transport positive regulation of transport positive regulation of transporter activity regulation of neurotransmitter receptor activity positive regulation of ion transmembrane transporter activity positive regulation of inhibitory postsynaptic potential positive regulation of nervous system process modulation of inhibitory postsynaptic potential inhibitory postsynaptic potential positive regulation of multicellular organismal process long-term synaptic potentiation regulation of synaptic plasticity positive regulation of synaptic transmission regulation of long-term synaptic potentiation regulation of developmental process cellular developmental process cell projection organization positive regulation of dendritic spine development cell development regulation of dendritic spine development neuron projection development cellular component organization positive regulation of developmental process neurogenesis multicellular organism development neuron differentiation dendrite development cell differentiation anatomical structure development cellular component organization or biogenesis system development developmental process dendritic spine development plasma membrane bounded cell projection organization nervous system development generation of neurons neuron development startle response regulation of response to external stimulus neuromuscular process negative regulation of response to stimulus negative regulation of biological process prepulse inhibition response to external stimulus negative regulation of response to external stimulus cell adhesion cell-cell adhesion neuron cell-cell adhesion axon extension axonogenesis developmental growth plasma membrane bounded cell projection morphogenesis cell growth cell morphogenesis cell projection morphogenesis neuron projection morphogenesis neuron projection extension developmental cell growth growth axon development cell morphogenesis involved in neuron differentiation developmental growth involved in morphogenesis anatomical structure morphogenesis cellular component biogenesis cell junction organization cellular component assembly cell junction assembly synapse organization synapse assembly import into cell receptor-mediated endocytosis endocytosis vesicle-mediated transport regulation of cellular component organization presynapse organization regulation of terminal button organization terminal button organization regulation of synapse organization regulation of presynapse organization regulation of synapse structure or activity protein localization to synapse regulation of protein localization positive regulation of protein localization to synapse regulation of protein localization to synapse macromolecule localization positive regulation of protein localization intracellular protein localization protein localization to cell junction synaptic vesicle endocytosis cellular localization synaptic vesicle cycle presynaptic endocytosis vesicle-mediated transport in synapse synaptic vesicle recycling establishment of localization in cell positive regulation of nervous system development positive regulation of cellular component organization regulation of nervous system development regulation of synapse assembly regulation of multicellular organismal development positive regulation of cellular component biogenesis regulation of cellular component biogenesis regulation of cell junction assembly positive regulation of cell junction assembly positive regulation of synapse assembly central nervous system development gliogenesis oligodendrocyte differentiation glial cell differentiation postsynapse organization organelle assembly postsynaptic specialization assembly postsynapse assembly organelle organization postsynaptic specialization organization dendritic spine morphogenesis dendritic spine organization regulation of cell projection organization regulation of postsynapse organization regulation of neuron projection development regulation of anatomical structure morphogenesis dendrite morphogenesis regulation of dendritic spine morphogenesis neuron projection organization regulation of plasma membrane bounded cell projection organization synaptic transmission, glutamatergic regulation of synaptic transmission, glutamatergic positive regulation of synaptic transmission, glutamatergic membrane organization membrane biogenesis presynaptic membrane assembly membrane assembly presynaptic membrane organization presynapse assembly regulation of NMDA receptor activity adult behavior respiratory gaseous exchange by respiratory system respiratory system process regulation of respiratory gaseous exchange regulation of respiratory system process regulation of respiratory gaseous exchange by nervous system process vesicle localization synaptic vesicle clustering organelle localization positive regulation of synaptic vesicle clustering regulation of synaptic vesicle clustering synaptic vesicle localization response to light stimulus visual learning visual behavior associative learning response to radiation response to abiotic stimulus rhythmic process circadian sleep/wake cycle circadian behavior rhythmic behavior circadian rhythm glutamate receptor signaling pathway positive regulation of glutamate receptor signaling pathway regulation of glutamate receptor signaling pathway negative regulation of dendritic spine morphogenesis negative regulation of cellular component organization negative regulation of dendritic spine development negative regulation of cellular process negative regulation of cell projection organization negative regulation of developmental process negative regulation of neuron projection development biological process involved in intraspecies interaction between organisms social behavior negative regulation of excitatory postsynaptic potential postsynaptic membrane assembly postsynaptic membrane organization vocalization behavior	cell periphery postsynapse cellular anatomical structure postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane somatodendritic compartment cell projection dendrite dendritic tree cell periphery postsynapse cellular anatomical structure postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection membrane-bounded organelle intracellular anatomical structure intracellular vesicle intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle endocytic vesicle glutamatergic synapse cell body neuronal cell body inhibitory synapse cell surface postsynaptic specialization membrane postsynaptic specialization presynapse GABA-ergic synapse excitatory synapse

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR051093	Neuroligin and Bile salt-activated lipase	Family
A, B	IPR002018	Carboxylesterase, type B	Domain
A, B	IPR019819	Carboxylesterase type B, conserved site	Conserved Site
A, B	IPR000460	Neuroligin	Family
A, B	IPR029058	Alpha/Beta hydrolase fold	Homologous Superfamily

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

7CEE | pdb_00007cee

Crystal structure of mouse neuroligin-3

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage