7CDB
Structure of GABARAPL1 in complex with GABA(A) receptor gamma 2
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d7cdba1 | Alpha and beta proteins (a+b) | beta-Grasp (ubiquitin-like) | Ubiquitin-like | GABARAP-like | automated matches | Mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
A | d7cdba2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | Mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
B | d7cdbb1 | Alpha and beta proteins (a+b) | beta-Grasp (ubiquitin-like) | Ubiquitin-like | GABARAP-like | automated matches | Mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
B | d7cdbb2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | Mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Atg8 | e7cdbA1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Atg8 | ECOD (1.6) |
B | Atg8 | e7cdbB1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Atg8 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02991 | Autophagy protein Atg8 ubiquitin like (ATG8) | Autophagy protein Atg8 ubiquitin like | Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [1]. Autophagy is generally known as a process involved in the degradation of ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR004241 | Autophagy protein Atg8 ubiquitin-like | Family | |
IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily | |
IPR005437 | Gamma-aminobutyric acid receptor subunit gamma-1/4 | Family | |
IPR006202 | Neurotransmitter-gated ion-channel ligand-binding domain | Domain | |
IPR036719 | Neurotransmitter-gated ion-channel transmembrane domain superfamily | Homologous Superfamily | |
IPR006028 | Gamma-aminobutyric acid A receptor/Glycine receptor alpha | Family | |
IPR005439 | Gamma-aminobutyric-acid A receptor, gamma 2 subunit | Family | |
IPR006029 | Neurotransmitter-gated ion-channel transmembrane domain | Domain | |
IPR036734 | Neurotransmitter-gated ion-channel ligand-binding domain superfamily | Homologous Superfamily | |
IPR018000 | Neurotransmitter-gated ion-channel, conserved site | Conserved Site | |
IPR038050 | Neuronal acetylcholine receptor | Homologous Superfamily | |
IPR006201 | Neurotransmitter-gated ion-channel | Family |