7CBY | pdb_00007cby

Structure of FOXG1 DNA binding domain bound to DBE2 DNA site

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2 Family	Forkhead DNA-binding domain	8101546	4000182	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	Winged helix DNA-binding domain	8101547	3000034	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	Ldh_1_C	e7cbyC1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ldh_1_C	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C	PF00250	Forkhead domain (Forkhead)	Forkhead domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C	Forkhead box protein G1	DNA binding binding nucleic acid binding DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity sequence-specific DNA binding sequence-specific double-stranded DNA binding double-stranded DNA binding	regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of DNA-templated transcription regulation of biological process negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process metabolic process cellular process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process multicellular organismal process regulation of developmental process cellular developmental process regulation of cell differentiation neurogenesis multicellular organism development neuron differentiation cell differentiation anatomical structure development negative regulation of cell differentiation system development developmental process negative regulation of developmental process nervous system development generation of neurons negative regulation of neuron differentiation regulation of neuron differentiation positive regulation of biological process cell cycle regulation of cell cycle positive regulation of cell cycle positive regulation of cellular process neuroblast proliferation cell population proliferation neural precursor cell proliferation neuron recognition axonogenesis cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development axon choice point recognition cell morphogenesis cellular component organization cell projection morphogenesis neuron projection morphogenesis cell recognition cellular component organization or biogenesis plasma membrane bounded cell projection organization axon midline choice point recognition axon guidance axon development cell morphogenesis involved in neuron differentiation anatomical structure morphogenesis neuron projection guidance neuron development head development central nervous system development animal organ development brain development regulation of mitotic cell cycle mitotic cell cycle ear morphogenesis embryonic organ morphogenesis ear development sensory organ development embryonic morphogenesis embryo development sensory organ morphogenesis inner ear development inner ear morphogenesis animal organ morphogenesis embryonic organ development dorsal/ventral pattern formation pattern specification process regionalization pyramidal neuron development forebrain development glial cell migration central nervous system neuron development telencephalon glial cell migration cerebral cortex development central nervous system neuron differentiation telencephalon cell migration forebrain cell migration gliogenesis cell migration cell motility radial glia-guided pyramidal neuron migration pyramidal neuron migration to cerebral cortex cerebral cortex cell migration neuron migration forebrain generation of neurons cerebral cortex radially oriented cell migration pallium development forebrain neuron development cerebral cortex radial glia-guided migration telencephalon development forebrain neuron differentiation pyramidal neuron differentiation neuron fate commitment cell fate determination neuron fate determination cell fate commitment positive regulation of neuron differentiation positive regulation of developmental process positive regulation of cell differentiation transcription by RNA polymerase II regulation of transcription by RNA polymerase II negative regulation of transcription by RNA polymerase II positive regulation of nervous system development positive regulation of cell population proliferation regulation of neuroblast proliferation regulation of neurogenesis regulation of cell development regulation of nervous system development positive regulation of neurogenesis regulation of multicellular organismal process regulation of neural precursor cell proliferation regulation of multicellular organismal development positive regulation of cell development positive regulation of neural precursor cell proliferation regulation of cell population proliferation positive regulation of multicellular organismal process positive regulation of neuroblast proliferation	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure nucleoplasm organelle lumen organelle nuclear lumen membraneless organelle intracellular membraneless organelle membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure nucleoplasm organelle lumen organelle nuclear lumen membraneless organelle intracellular membraneless organelle chromatin chromosome
B	DNA (5'-D(CPAPAPAPAPTPGPTPAPAPAPCPAPAPGPA)-3')	-	-	-
A	DNA (5'-D(TPCPTPTPGPTPTPTPAPCPAPTPTPTPTPG)-3')	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C	IPR018122	Fork head domain conserved site1	Conserved Site
C	IPR001766	Fork head domain	Domain
C	IPR030456	Fork head domain conserved site 2	Conserved Site
C	IPR047208	Forkhead box protein G1	Family
C	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
C	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C	Pharos: P55316	microcephaly Rett syndrome, congenital variant acrocallosal syndrome intellectual disability nervous system disorder 14q12 microdeletion syndrome visual epilepsy atypical Rett syndrome Rett syndrome lung cancer medulloblastoma Nonepileptic Seizures cystic fibrosis malignant ependymoma microlissencephaly microcephaly Rett syndrome, congenital variant acrocallosal syndrome intellectual disability nervous system disorder 14q12 microdeletion syndrome visual epilepsy atypical Rett syndrome Rett syndrome lung cancer medulloblastoma Nonepileptic Seizures cystic fibrosis malignant ependymoma microlissencephaly psoriasis epilepsy Lennox-Gastaut syndrome malignant mesothelioma pilocytic astrocytoma atypical teratoid rhabdoid tumor

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.