Mycobacterium smegmatis LpqY-SugABC complex in the resting state
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| E | SBP_bac_1_N_1 | e7caeE1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_1_N_1 | ECOD (1.6) |
| E | SBP_bac_1_C_2 | e7caeE2 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_1_C_2 | ECOD (1.6) |
| D [auth B] | BPD_transp_1 | e7caeB1 | A: alpha bundles | X: Type II ABC exporter transmembrane domain fold | H: Type I ABC importer transmembrane domain fold (From Topology) | T: Type I ABC importer transmembrane domain fold | F: BPD_transp_1 | ECOD (1.6) |
| C [auth A] | BPD_transp_1 | e7caeA1 | A: alpha bundles | X: Type II ABC exporter transmembrane domain fold | H: Type I ABC importer transmembrane domain fold (From Topology) | T: Type I ABC importer transmembrane domain fold | F: BPD_transp_1 | ECOD (1.6) |
| B [auth D] | PRK11000 | e7caeD2 | A: beta barrels | X: OB-fold | H: MOP-like (From Topology) | T: MOP-like | F: PRK11000 | ECOD (1.6) |
| B [auth D] | TOBE_1 | e7caeD3 | A: beta barrels | X: OB-fold | H: MOP-like (From Topology) | T: MOP-like | F: TOBE_1 | ECOD (1.6) |
| B [auth D] | PRK11000,ABC_tran | e7caeD1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PRK11000,ABC_tran | ECOD (1.6) |
| A [auth C] | PRK11000 | e7caeC1 | A: beta barrels | X: OB-fold | H: MOP-like (From Topology) | T: MOP-like | F: PRK11000 | ECOD (1.6) |
| A [auth C] | TOBE_1 | e7caeC3 | A: beta barrels | X: OB-fold | H: MOP-like (From Topology) | T: MOP-like | F: TOBE_1 | ECOD (1.6) |
| A [auth C] | PRK11000,ABC_tran | e7caeC2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PRK11000,ABC_tran | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| C [auth A] | 1.10.3720.10 | Mainly Alpha | Orthogonal Bundle | MetI-like fold | MetI-like | CATH (utative) |
| B [auth D] | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (utative) |
| A [auth C] | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF01547 | Bacterial extracellular solute-binding protein (SBP_bac_1) | Bacterial extracellular solute-binding protein | - | Family | |
| D [auth B] | PF00528 | Binding-protein-dependent transport system inner membrane component (BPD_transp_1) | Binding-protein-dependent transport system inner membrane component | - | Family |
| C [auth A] | PF00528 | Binding-protein-dependent transport system inner membrane component (BPD_transp_1) | Binding-protein-dependent transport system inner membrane component | - | Family |
| A [auth C], B [auth D] | PF17912 | MalK OB fold domain (OB_MalK) | MalK OB fold domain | This entry corresponds to one of two OB-fold domains found in the MalK transport protein. | Domain |
| A [auth C], B [auth D] | PF00005 | ABC transporter (ABC_tran) | ABC transporter | ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are comp ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
| Chains | External Link | Type | Class | Superfamily | Family |
|---|---|---|---|---|---|
| OPM | Transmembrane | Alpha-helical polytopic | ABC transporters | Binding-protein-dependent transport system |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| MemProtMD | Annotated as membrane protein by MemProtMD |














