7C9P
Crystal structure of rice histone-fold dimer GHD8/OsNF-YC2
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d7c9pa_ | All alpha proteins | Histone-fold | Histone-fold | TBP-associated factors, TAFs | automated matches | Rice (Oryza sativa Japonica Group ) [TaxId: 39947 ], | SCOPe (2.08) |
C | d7c9pc_ | All alpha proteins | Histone-fold | Histone-fold | TBP-associated factors, TAFs | automated matches | Rice (Oryza sativa Japonica Group ) [TaxId: 39947 ], | SCOPe (2.08) |
B | d7c9pb_ | All alpha proteins | Histone-fold | Histone-fold | TBP-associated factors, TAFs | automated matches | Rice (Oryza sativa Japonica Group ) [TaxId: 39947 ], | SCOPe (2.08) |
D | d7c9pd_ | All alpha proteins | Histone-fold | Histone-fold | TBP-associated factors, TAFs | automated matches | Rice (Oryza sativa Japonica Group ) [TaxId: 39947 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | TBP-associated factors TAFs | 8099127 | 4000797 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Core histone-like | 8099128 | 3001387 | SCOP2 (2022-06-29) |
C | SCOP2B Superfamily | Core histone-like | 8099128 | 3001387 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Core histone-like | 8097130 | 3001387 | SCOP2B (2022-06-29) |
D | SCOP2 Family | TBP-associated factors TAFs | 8097129 | 4000797 | SCOP2 (2022-06-29) |
D | SCOP2 Superfamily | Core histone-like | 8097130 | 3001387 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00808 | e7c9pA1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00808 | ECOD (1.6) |
C | PF00808 | e7c9pC1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00808 | ECOD (1.6) |
B | PF00808 | e7c9pB1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00808 | ECOD (1.6) |
D | PF00125 | e7c9pD1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00808 | Histone-like transcription factor (CBF/NF-Y) and archaeal histone (CBFD_NFYB_HMF) | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | This family includes archaebacterial histones and histone like transcription factors from eukaryotes. | Domain | |
PF00125 | Core histone H2A/H2B/H3/H4 (Histone) | Core histone H2A/H2B/H3/H4 | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR009072 | Histone-fold | Homologous Superfamily | |
IPR027113 | Transcription factor NFYB/HAP3 | Family | |
IPR003956 | Transcription factor, NFYB/HAP3, conserved site | Conserved Site | |
IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain | Domain | |
IPR009072 | Histone-fold | Homologous Superfamily | |
IPR007125 | Histone H2A/H2B/H3 | Domain |