7C8P | pdb_00007c8p

Structural and functional characterization of human group A rotavirus P[25] VP8*

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d7c8pb_	All beta proteins	Concanavalin A-like lectins/glucanases	Concanavalin A-like lectins/glucanases	automated matches	automated matches	(Rotavirus A ) [TaxId: 28875 ],	SCOPe (2.08)
A	d7c8pa_	All beta proteins	Concanavalin A-like lectins/glucanases	Concanavalin A-like lectins/glucanases	automated matches	automated matches	(Rotavirus A ) [TaxId: 28875 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2 Family	vp4 sialic acid binding domain	8102858	4002124	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Concanavalin A-like lectins/glucanases	8102859	3000120	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	Concanavalin A-like lectins/glucanases	8102859	3000120	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	VP4_haemagglut	e7c8pB1	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Concanavalin A-like lectins/glucanases	F: VP4_haemagglut	ECOD (1.6)
A	VP4_haemagglut	e7c8pA1	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Concanavalin A-like lectins/glucanases	F: VP4_haemagglut	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Outer capsid protein VP4	-	symbiont-mediated disruption of host anatomical structure biological process involved in interspecies interaction between organisms symbiont entry into host cell via permeabilization of host membrane viral life cycle symbiont-mediated disruption of host cellular anatomical structure biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated perturbation of host membrane permeabilization of host organelle membrane involved in viral entry into host cell symbiont entry into host cell viral process symbiont entry into host disruption of anatomical structure in another organism virion attachment to host cell symbiont-mediated disruption of host anatomical structure biological process involved in interspecies interaction between organisms symbiont entry into host cell via permeabilization of host membrane viral life cycle symbiont-mediated disruption of host cellular anatomical structure biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated perturbation of host membrane permeabilization of host organelle membrane involved in viral entry into host cell symbiont entry into host cell viral process symbiont entry into host disruption of anatomical structure in another organism virion attachment to host cell adhesion of symbiont to host cell adhesion of symbiont to host	host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part host intracellular membrane-bounded organelle host intracellular part host cell cytoplasm part host intracellular organelle host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm host intracellular region viral capsid host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part host intracellular membrane-bounded organelle host intracellular part host cell cytoplasm part host intracellular organelle host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm host intracellular region viral capsid icosahedral viral capsid virion component viral outer capsid host cell endoplasmic reticulum host cell rough endoplasmic reticulum

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR000416	Haemagglutinin outer capsid protein VP4, concanavalin-like domain	Domain
A, B	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
A, B	IPR035329	Rotavirus VP4 helical domain	Domain
A, B	IPR042546	Outer capsid protein VP4	Family
A, B	IPR035330	Rotavirus VP4, membrane interaction domain	Domain
A, B	IPR038017	Rotavirus VP4, membrane interaction domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.