7C4P | pdb_00007c4p

Crystal structure of DBD plasma treated zebrafish TRF2 myb-domain complexed with DNA

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D [auth B]	SCOP2 Family	Myb/SANT domain	8103405	4000317	SCOP2 (2022-06-29)
D [auth B]	SCOP2 Superfamily	Homeodomain-like	8103406	3000001	SCOP2 (2022-06-29)
A	SCOP2 Family	Myb/SANT domain	8103485	4000317	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Homeodomain-like	8103486	3000001	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth B]	Myb_DNA-binding	e7c4pB1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Myb_DNA-binding	ECOD (1.6)
A	Myb_DNA-binding	e7c4pA1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Myb_DNA-binding	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
D [auth B]	PF00249	Myb-like DNA-binding domain (Myb_DNA-binding)	Myb-like DNA-binding domain	This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].	Domain
A	PF00249	Myb-like DNA-binding domain (Myb_DNA-binding)	Myb-like DNA-binding domain	This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E	DNA (5'-D(TPTPAPGPGPGPTPTPAPG)-3')	-	-	-
D [auth B]	Terfa protein	identical protein binding protein binding binding protein homodimerization activity protein dimerization activity sequence-specific DNA binding DNA binding nucleic acid binding telomeric DNA binding	cellular response to stimulus telomere maintenance in response to DNA damage response to stimulus protection from non-homologous end joining at telomere telomere organization chromosome organization primary metabolic process DNA metabolic process nucleic acid metabolic process telomere maintenance cellular component organization nucleobase-containing compound metabolic process organelle organization cellular response to stress telomere capping cellular response to stimulus telomere maintenance in response to DNA damage response to stimulus protection from non-homologous end joining at telomere telomere organization chromosome organization primary metabolic process DNA metabolic process nucleic acid metabolic process telomere maintenance cellular component organization nucleobase-containing compound metabolic process organelle organization cellular response to stress telomere capping DNA damage response response to stress cellular process metabolic process cellular component organization or biogenesis macromolecule metabolic process	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle chromosome chromosome, telomeric region chromosomal region membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle chromosome chromosome, telomeric region chromosomal region membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
C [auth D], F	DNA (5'-D(CPCPCPTPAPAPCPCPCPTPAPA)-3')	-	-	-
B [auth C]	DNA (5'-D(TPTPAPGPGPGPTPTPAPGPGPG)-3')	-	-	-
A	Telomere repeat factor a	identical protein binding protein binding binding protein homodimerization activity protein dimerization activity sequence-specific DNA binding DNA binding nucleic acid binding telomeric DNA binding	cellular response to stimulus telomere maintenance in response to DNA damage response to stimulus protection from non-homologous end joining at telomere telomere organization chromosome organization primary metabolic process DNA metabolic process nucleic acid metabolic process telomere maintenance cellular component organization nucleobase-containing compound metabolic process organelle organization cellular response to stress telomere capping cellular response to stimulus telomere maintenance in response to DNA damage response to stimulus protection from non-homologous end joining at telomere telomere organization chromosome organization primary metabolic process DNA metabolic process nucleic acid metabolic process telomere maintenance cellular component organization nucleobase-containing compound metabolic process organelle organization cellular response to stress telomere capping DNA damage response response to stress cellular process metabolic process cellular component organization or biogenesis macromolecule metabolic process	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle chromosome chromosome, telomeric region chromosomal region membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle chromosome chromosome, telomeric region chromosomal region membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
D [auth B]	IPR009057	Homedomain-like superfamily	Homologous Superfamily
D [auth B]	IPR001005	SANT/Myb domain	Domain
D [auth B]	IPR036507	Telomere repeat-binding factor, dimerisation domain superfamily	Homologous Superfamily
D [auth B]	IPR030657	Telomeric repeat-binding factor 2	Family
D [auth B]	IPR013867	Telomere repeat-binding factor, dimerisation domain	Domain
D [auth B]	IPR017930	Myb domain	Domain
A	IPR009057	Homedomain-like superfamily	Homologous Superfamily
A	IPR001005	SANT/Myb domain	Domain
A	IPR036507	Telomere repeat-binding factor, dimerisation domain superfamily	Homologous Superfamily
A	IPR030657	Telomeric repeat-binding factor 2	Family
A	IPR013867	Telomere repeat-binding factor, dimerisation domain	Domain
A	IPR017930	Myb domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.