Helical reconstruction of Zika virus complexed with Fab C10
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| E [auth N] | SCOP2B Superfamily | E set domains | 8073018 | 3000070 | SCOP2B (2022-06-29) |
| A [auth B] | SCOP2B Superfamily | E set domains | 8073018 | 3000070 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| D [auth L] | V-set_3 | e7c2tL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_3 | ECOD (1.6) |
| H [auth W] | V-set_3 | e7c2tW1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_3 | ECOD (1.6) |
| G [auth V] | V-set_8 | e7c2tV1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
| C [auth K] | V-set_8 | e7c2tK1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
| F [auth Q] | Flavi_M | e7c2tQ1 | A: extended segments | X: Small envelope protein M (From Topology) | H: Small envelope protein M (From Topology) | T: Small envelope protein M | F: Flavi_M | ECOD (1.6) |
| B [auth E] | Flavi_M | e7c2tE1 | A: extended segments | X: Small envelope protein M (From Topology) | H: Small envelope protein M (From Topology) | T: Small envelope protein M | F: Flavi_M | ECOD (1.6) |
| E [auth N] | Flavi_glycop_C | e7c2tN1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Flavi_glycop_C | ECOD (1.6) |
| E [auth N] | Flavi_glycoprot | e7c2tN2 | A: beta complex topology | X: Viral glycoprotein, central and dimerisation domains-like | H: Viral glycoprotein, central and dimerisation domains (From Topology) | T: Viral glycoprotein, central and dimerisation domains | F: Flavi_glycoprot | ECOD (1.6) |
| E [auth N] | flavi_E_stem | e7c2tN3 | A: alpha arrays | X: Transmembrane domain of envelope protein E (From Topology) | H: Transmembrane domain of envelope protein E (From Topology) | T: Transmembrane domain of envelope protein E | F: flavi_E_stem | ECOD (1.6) |
| A [auth B] | Flavi_glycop_C | e7c2tB2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Flavi_glycop_C | ECOD (1.6) |
| A [auth B] | Flavi_glycoprot | e7c2tB3 | A: beta complex topology | X: Viral glycoprotein, central and dimerisation domains-like | H: Viral glycoprotein, central and dimerisation domains (From Topology) | T: Viral glycoprotein, central and dimerisation domains | F: Flavi_glycoprot | ECOD (1.6) |
| A [auth B] | flavi_E_stem | e7c2tB1 | A: alpha arrays | X: Transmembrane domain of envelope protein E (From Topology) | H: Transmembrane domain of envelope protein E (From Topology) | T: Transmembrane domain of envelope protein E | F: flavi_E_stem | ECOD (1.6) |
IMGT Antibody Annotation IMGT Database Homepage
| Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
|---|---|---|---|---|---|---|---|---|
| D [auth L], H [auth W] | Fab C10, anti-ZIKA-DENV, neutralizing | V-LAMBDA | Homo sapiens (human) | IGLV2-14*03, IGLJ3*02 | V-DOMAIN V-LAMBDA | IG | FAB-GAMMA-1_LAMBDA | IMGT (202551-0) |
| C [auth K], G [auth V] | Fab C10, anti-ZIKA-DENV, neutralizing | VH | Homo sapiens (human) | IGHV1-3*01, IGHJ4*01, IGHJ4*02, IGHJ4*03 | V-DOMAIN VH | IG | FAB-GAMMA-1_LAMBDA | IMGT (202551-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
| Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
|---|---|---|---|---|---|
| D [auth L], H [auth W] | Light Chain | IGLV2 | Lambda | envelope protein | SAbDab (2025-12-26) |
| C [auth K], G [auth V] | Heavy Chain | IGHV1 | - | envelope protein | SAbDab (2025-12-26) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| B [auth E], F [auth Q] | PF01004 | Flavivirus envelope glycoprotein M (Flavi_M) | Flavivirus envelope glycoprotein M | - | Family |
| A [auth B], E [auth N] | PF00869 | Flavivirus glycoprotein, central and dimerisation domains (Flavi_glycoprot) | Flavivirus glycoprotein, central and dimerisation domains | Domain | |
| A [auth B], E [auth N] | PF21659 | Flavivirus envelope glycoprotein E, stem/anchor domain (Flavi_E_stem) | Flavivirus envelope glycoprotein E, stem/anchor domain | This entry represents the stem/anchor domain found at the C-terminal of envelope glycoprotein E from Flavivirus. This domain comprises a stem region followed by two transmembrane anchor domains [1-5]. | Domain |
| A [auth B], E [auth N] | PF02832 | Flavivirus glycoprotein, immunoglobulin-like domain (Flavi_glycop_C) | Flavivirus glycoprotein, immunoglobulin-like domain | Domain |














