Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyRelE-like8095325 3000741 SCOP2B (2022-06-29)
CSCOP2 FamilyYoeB/Txe-like8095324 4003384 SCOP2 (2022-06-29)
CSCOP2 SuperfamilyRelE-like8095325 3000741 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF06769e7bwfA1 A: a+b two layersX: RelE-likeH: RelE-like (From Topology)T: RelE-likeF: PF06769ECOD (1.6)
CPF06769e7bwfC1 A: a+b two layersX: RelE-likeH: RelE-like (From Topology)T: RelE-likeF: PF06769ECOD (1.6)
BPF02604e7bwfB1 A: a+b duplicates or obligate multimersX: YefM-like (From Topology)H: YefM-like (From Topology)T: YefM-likeF: PF02604ECOD (1.6)
DPF02604e7bwfD1 A: a+b duplicates or obligate multimersX: YefM-like (From Topology)H: YefM-like (From Topology)T: YefM-likeF: PF02604ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, C
PF06769YoeB-like toxin of bacterial type II toxin-antitoxin system (YoeB_toxin)YoeB-like toxin of bacterial type II toxin-antitoxin systemYoeB_toxin is a family of bacterial toxins that forms one component of the type II toxin-antitoxin system in E. coli whose antitoxin is represented by YefM, found in Pfam:PF02604. The plasmid encoded Axe-Txe proteins in Enterococcus faecium act as a ...YoeB_toxin is a family of bacterial toxins that forms one component of the type II toxin-antitoxin system in E. coli whose antitoxin is represented by YefM, found in Pfam:PF02604. The plasmid encoded Axe-Txe proteins in Enterococcus faecium act as an antitoxin-toxin pair. When the plasmid is lost, the antitoxin is degraded relatively quickly by host enzymes. This allows the toxin to interact with its intracellular target, thus killing the cell or impeding cell growth [1]. These toxins are highly potent protein synthesis inhibitors, specifically blocking the initiation of translation. In the case of YoeB, it binds to the 50 S ribosomal subunit in 70 S ribosomes and interacts with the A site leading to mRNA cleavage at this site. As a result, the 3'-end portion of the mRNA is released from ribosomes, and translation initiation is effectively inhibited [2,3].
Domain
PF02604Antitoxin Phd_YefM, type II toxin-antitoxin system (PhdYeFM_antitox)Antitoxin Phd_YefM, type II toxin-antitoxin systemMembers of this family act as antitoxins in type II toxin-antitoxin systems [1]. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin [2] ...Members of this family act as antitoxins in type II toxin-antitoxin systems [1]. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin [2]. This domain complexes with Txe toxins containing Pfam:PF06769, Fic/DOC toxins containing Pfam:PF02661 and YafO toxins containing Pfam:PF13957.
Domain
PF02604Antitoxin Phd_YefM, type II toxin-antitoxin system (PhdYeFM_antitox)Antitoxin Phd_YefM, type II toxin-antitoxin systemMembers of this family act as antitoxins in type II toxin-antitoxin systems [1]. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin [2] ...Members of this family act as antitoxins in type II toxin-antitoxin systems [1]. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin [2]. This domain complexes with Txe toxins containing Pfam:PF06769, Fic/DOC toxins containing Pfam:PF02661 and YafO toxins containing Pfam:PF13957.
Domain