7BU1 | pdb_00007bu1

Crystal structure of TrmO from Pseudomonas aeruginosa


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BUPF0066e7bu1B2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: UPF0066ECOD (1.6)
BKOG2942_likee7bu1B1 A: a+b two layersX: RelE-likeH: YaeB-like (From Topology)T: YaeB-likeF: KOG2942_likeECOD (1.6)
AUPF0066e7bu1A1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: UPF0066ECOD (1.6)
AKOG2942_likee7bu1A2 A: a+b two layersX: RelE-likeH: YaeB-like (From Topology)T: YaeB-likeF: KOG2942_likeECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF18389TrmO C-terminal domain (TrmO_C)TrmO C-terminal domainThis domain is found at the C-terminus of TrmO tRNA methyltransferase proteins. This domain has a RelE fold. Domain
A, B
PF01980tRNA-methyltransferase O N-terminal domain (TrmO_N)tRNA-methyltransferase O N-terminal domainThis family includes members such as TrmO (tRNA-methyltransferase O) also known as YaeB, which contains a single-sheeted beta-barrel structure. TrmO is an AdoMet-dependent methyltransferase responsible for m6t6A formation [1]. Its human homolog, is r ...This family includes members such as TrmO (tRNA-methyltransferase O) also known as YaeB, which contains a single-sheeted beta-barrel structure. TrmO is an AdoMet-dependent methyltransferase responsible for m6t6A formation [1]. Its human homolog, is responsible for formation of m6t6A37 in cytoplasmic tRNASer. Lack of TrmO decreases attenuation activity of the thr operon, indicating that N6 methylation of m6t6A37 ensures efficient decoding of ACY codons [2]. In bacteria and eukaryotes, TrmO has a C-terminal domain containing the conserved DPRxxY motif. Where the Asp194 and Arg196 in this motif of E. coli TrmO are necessary for N6-methylation. However, no archaeal YaeB has a C-terminal domain containing the DPRxxY motif that is conserved in bacterial and mammalian TrmO homologs [1]. This entry represents the N-terminal domain of TrmO.
Domain