7BSI | pdb_00007bsi

Epstein-Barr virus, one asymmetric unit structure of the icosahedral tegumented capsid

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth m]	Ldh_1_C	e7bsim1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ldh_1_C	ECOD (v294.1)
B [auth Y]	Ldh_1_C	e7bsiY1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ldh_1_C	ECOD (v294.1)
BA [auth G]	Ldh_1_C	e7bsiG1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ldh_1_C	ECOD (v294.1)
C [auth Z]	Ldh_1_C	e7bsiZ1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ldh_1_C	ECOD (v294.1)
DA [auth H]	Ldh_1_C	e7bsiH1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ldh_1_C	ECOD (v294.1)
FA [auth I]	Ldh_1_C	e7bsiI1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ldh_1_C	ECOD (v294.1)
HA [auth J]	Ldh_1_C	e7bsiJ1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ldh_1_C	ECOD (v294.1)
JA [auth K]	Ldh_1_C	e7bsiK1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ldh_1_C	ECOD (v294.1)
LA [auth L]	Ldh_1_C	e7bsiL1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ldh_1_C	ECOD (v294.1)
M [auth P]	Ldh_1_C	e7bsiP1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ldh_1_C	ECOD (v294.1)
O [auth Q]	Ldh_1_C	e7bsiQ1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ldh_1_C	ECOD (v294.1)
OA [auth y]	Ldh_1_C	e7bsiy1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ldh_1_C	ECOD (v294.1)
Q [auth R]	Ldh_1_C	e7bsiR1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ldh_1_C	ECOD (v294.1)
S [auth 0]	Ldh_1_C	e7bsi01	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ldh_1_C	ECOD (v294.1)
U [auth 1]	Ldh_1_C	e7bsi11	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ldh_1_C	ECOD (v294.1)
W [auth X]	Ldh_1_C	e7bsiX1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ldh_1_C	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
CA [auth A], D [auth S], E [auth T], EA [auth B], GA [auth C], CA [auth A], D [auth S], E [auth T], EA [auth B], GA [auth C], I [auth l], IA [auth D], KA [auth E], MA [auth F], N [auth M], NA [auth x], P [auth N], R [auth O], T [auth U], V, X [auth k]	PF01802	Herpesvirus VP23 like capsid protein (Herpes_V23)	Herpesvirus VP23 like capsid protein	-	Family
CA [auth A], D [auth S], E [auth T], EA [auth B], GA [auth C], CA [auth A], D [auth S], E [auth T], EA [auth B], GA [auth C], I [auth l], IA [auth D], KA [auth E], MA [auth F], N [auth M], NA [auth x], P [auth N], R [auth O], T [auth U], V, X [auth k]	PF03122	Herpes virus major capsid protein (Herpes_MCP)	Herpes virus major capsid protein	-	Family
CA [auth A], D [auth S], E [auth T], EA [auth B], GA [auth C], CA [auth A], D [auth S], E [auth T], EA [auth B], GA [auth C], I [auth l], IA [auth D], KA [auth E], MA [auth F], N [auth M], NA [auth x], P [auth N], R [auth O], T [auth U], V, X [auth k]	PF03327	Herpesvirus capsid shell protein VP19C (Herpes_VP19C)	Herpesvirus capsid shell protein VP19C	-	Family
AA [auth d], G [auth f], H [auth g], K [auth 6], L [auth 7], AA [auth d], G [auth f], H [auth g], K [auth 6], L [auth 7], QA [auth i], RA [auth j], TA [auth 8], UA [auth 9], Z [auth c]	PF01802	Herpesvirus VP23 like capsid protein (Herpes_V23)	Herpesvirus VP23 like capsid protein	-	Family
F [auth e], J [auth 5], PA [auth h], SA [auth a], Y [auth b]	PF03327	Herpesvirus capsid shell protein VP19C (Herpes_VP19C)	Herpesvirus capsid shell protein VP19C	-	Family
A [auth m], B [auth Y], BA [auth G], C [auth Z], DA [auth H], A [auth m], B [auth Y], BA [auth G], C [auth Z], DA [auth H], FA [auth I], HA [auth J], JA [auth K], LA [auth L], M [auth P], O [auth Q], OA [auth y], Q [auth R], S [auth 0], U [auth 1], W [auth X]	PF01802	Herpesvirus VP23 like capsid protein (Herpes_V23)	Herpesvirus VP23 like capsid protein	-	Family
A [auth m], B [auth Y], BA [auth G], C [auth Z], DA [auth H], A [auth m], B [auth Y], BA [auth G], C [auth Z], DA [auth H], FA [auth I], HA [auth J], JA [auth K], LA [auth L], M [auth P], O [auth Q], OA [auth y], Q [auth R], S [auth 0], U [auth 1], W [auth X]	PF03122	Herpes virus major capsid protein (Herpes_MCP)	Herpes virus major capsid protein	-	Family
A [auth m], B [auth Y], BA [auth G], C [auth Z], DA [auth H], A [auth m], B [auth Y], BA [auth G], C [auth Z], DA [auth H], FA [auth I], HA [auth J], JA [auth K], LA [auth L], M [auth P], O [auth Q], OA [auth y], Q [auth R], S [auth 0], U [auth 1], W [auth X]	PF03327	Herpesvirus capsid shell protein VP19C (Herpes_VP19C)	Herpesvirus capsid shell protein VP19C	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
CA [auth A], D [auth S], E [auth T], EA [auth B], GA [auth C], CA [auth A], D [auth S], E [auth T], EA [auth B], GA [auth C], I [auth l], IA [auth D], KA [auth E], MA [auth F], N [auth M], NA [auth x], P [auth N], R [auth O], T [auth U], V, X [auth k]	Major capsid protein	structural molecule activity	-	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle viral capsid icosahedral viral capsid virion component T=16 icosahedral viral capsid
AA [auth d], G [auth f], H [auth g], K [auth 6], L [auth 7], AA [auth d], G [auth f], H [auth g], K [auth 6], L [auth 7], QA [auth i], RA [auth j], TA [auth 8], UA [auth 9], Z [auth c]	Triplex capsid protein 2	structural molecule activity	-	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle
F [auth e], J [auth 5], PA [auth h], SA [auth a], Y [auth b]	Triplex capsid protein 1	DNA binding binding nucleic acid binding	virion assembly viral process viral capsid assembly viral life cycle	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle
A [auth m], B [auth Y], BA [auth G], C [auth Z], DA [auth H], A [auth m], B [auth Y], BA [auth G], C [auth Z], DA [auth H], FA [auth I], HA [auth J], JA [auth K], LA [auth L], M [auth P], O [auth Q], OA [auth y], Q [auth R], S [auth 0], U [auth 1], W [auth X]	Small capsomere-interacting protein	-	viral process	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
CA [auth A], D [auth S], E [auth T], EA [auth B], GA [auth C], CA [auth A], D [auth S], E [auth T], EA [auth B], GA [auth C], I [auth l], IA [auth D], KA [auth E], MA [auth F], N [auth M], NA [auth x], P [auth N], R [auth O], T [auth U], V, X [auth k]	IPR000912	Herpesvirus major capsid protein	Family
CA [auth A], D [auth S], E [auth T], EA [auth B], GA [auth C], CA [auth A], D [auth S], E [auth T], EA [auth B], GA [auth C], I [auth l], IA [auth D], KA [auth E], MA [auth F], N [auth M], NA [auth x], P [auth N], R [auth O], T [auth U], V, X [auth k]	IPR023233	Herpesvirus major capsid protein, upper domain superfamily	Homologous Superfamily
AA [auth d], G [auth f], H [auth g], K [auth 6], L [auth 7], AA [auth d], G [auth f], H [auth g], K [auth 6], L [auth 7], QA [auth i], RA [auth j], TA [auth 8], UA [auth 9], Z [auth c]	IPR002690	Herpesvirus capsid protein 2	Family
F [auth e], J [auth 5], PA [auth h], SA [auth a], Y [auth b]	IPR004999	Herpesvirus capsid shell protein 1	Family
A [auth m], B [auth Y], BA [auth G], C [auth Z], DA [auth H], A [auth m], B [auth Y], BA [auth G], C [auth Z], DA [auth H], FA [auth I], HA [auth J], JA [auth K], LA [auth L], M [auth P], O [auth Q], OA [auth y], Q [auth R], S [auth 0], U [auth 1], W [auth X]	IPR009299	Gammaherpesvirus capsid	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.