7BGD

Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (body only)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
J [auth o]SCOP2B SuperfamilyS15/NS1 RNA-binding domain8072621 3001284 SCOP2B (2022-06-29)
K [auth p]SCOP2B SuperfamilyRibosomal protein S168066555 3000680 SCOP2B (2022-06-29)
L [auth q]SCOP2B SuperfamilyNucleic acid-binding proteins8059272 3000135 SCOP2B (2022-06-29)
D [auth d]SCOP2B SuperfamilyAlpha-L RNA-binding motif8083392 3001473 SCOP2B (2022-06-29)
F [auth f]SCOP2B SuperfamilyRibosomal protein S68066489 3001323 SCOP2B (2022-06-29)
G [auth h]SCOP2B SuperfamilyRibosomal protein S88079049 3000709 SCOP2B (2022-06-29)
H [auth k]SCOP2B SuperfamilyTranslational machinery components8099268 3000571 SCOP2B (2022-06-29)
I [auth l]SCOP2B SuperfamilyNucleic acid-binding proteins8098336 3000135 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
J [auth o]PF00312e7bgdo1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: PF00312ECOD (1.6)
K [auth p]PF00886e7bgdp1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: PF00886ECOD (1.6)
L [auth q]PF00366e7bgdq1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00366ECOD (1.6)
M [auth r]PF01084e7bgdr1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: PF01084ECOD (1.6)
N [auth t]PF01649e7bgdt1 A: alpha bundlesX: Spectrin repeat-likeH: Ribosomal protein S20 (From Topology)T: Ribosomal protein S20F: PF01649ECOD (1.6)
C [auth b]PF00318e7bgdb1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: PF00318ECOD (1.6)
D [auth d]PF00163,PF01479e7bgdd1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
E [auth e]PF03719e7bgde1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF03719ECOD (1.6)
E [auth e]PF00333e7bgde2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: PF00333ECOD (1.6)
F [auth f]PF01250e7bgdf1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: PF01250ECOD (1.6)
G [auth h]PF00410e7bgdh2 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: PF00410ECOD (1.6)
G [auth h]PF00410e7bgdh1 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: PF00410ECOD (1.6)
H [auth k]PF00411e7bgdk1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00411ECOD (1.6)
I [auth l]PF00164e7bgdl1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
J [auth o]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
K [auth p]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
L [auth q]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
M [auth r]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
N [auth t]PF01649Ribosomal protein S20 (Ribosomal_S20p)Ribosomal protein S20- Family
C [auth b]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
D [auth d]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
D [auth d]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
E [auth e]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
E [auth e]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
F [auth f]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6- Domain
G [auth h]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
H [auth k]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
I [auth l]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
mRNA---
J [auth o]30S ribosomal protein S15
K [auth p]30S ribosomal protein S16
L [auth q]30S ribosomal protein S17
M [auth r]30S ribosomal protein S18
N [auth t]30S ribosomal protein S20
B [auth a]16S ribosomal RNA---
C [auth b]30S ribosomal protein S2
D [auth d]30S ribosomal protein S4
E [auth e]30S ribosomal protein S5
F [auth f]30S ribosomal protein S6
G [auth h]30S ribosomal protein S8
H [auth k]30S ribosomal protein S11
I [auth l]30S ribosomal protein S12

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
J [auth o]IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
J [auth o]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
J [auth o]IPR000589Small ribosomal subunit protein uS15Family
K [auth p]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
K [auth p]IPR000307Small ribosomal subunit protein bS16Family
L [auth q]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
L [auth q]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
L [auth q]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
L [auth q]IPR000266Small ribosomal subunit protein uS17Family
M [auth r]IPR001648Small ribosomal subunit protein bS18Family
M [auth r]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
M [auth r]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
N [auth t]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
N [auth t]IPR002583Small ribosomal subunit protein bS20Family
C [auth b]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
C [auth b]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
C [auth b]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
C [auth b]IPR001865Small ribosomal subunit protein uS2Family
D [auth d]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
D [auth d]IPR002942RNA-binding S4 domainDomain
D [auth d]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
D [auth d]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
D [auth d]IPR005709Small ribosomal subunit protein uS4, bacterial-typeFamily
D [auth d]IPR022801Small ribosomal subunit protein uS4Family
E [auth e]IPR000851Small ribosomal subunit protein uS5Family
E [auth e]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
E [auth e]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
E [auth e]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
E [auth e]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
E [auth e]IPR005712Small ribosomal subunit protein uS5, bacterial-typeFamily
E [auth e]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
F [auth f]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
F [auth f]IPR000529Small ribosomal subunit protein bS6Family
F [auth f]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
F [auth f]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
F [auth f]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
G [auth h]IPR000630Small ribosomal subunit protein uS8Family
G [auth h]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
G [auth h]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
H [auth k]IPR001971Small ribosomal subunit protein uS11Family
H [auth k]IPR019981Small ribosomal subunit protein uS11, bacterial-typeFamily
H [auth k]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
H [auth k]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
I [auth l]IPR006032Small ribosomal subunit protein uS12Family
I [auth l]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
I [auth l]IPR005679Ribosomal protein uS12, bacterial-typeFamily